To install this package, start R and enter:
## try http:// if https:// URLs are not supported
source("https://bioconductor.org/biocLite.R")
biocLite("MBASED")
In most cases, you don't need to download the package archive at all.
MBASED
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Package containing functions for ASE analysis using Meta-analysis Based Allele-Specific Expression Detection
Bioconductor version: Release (3.5)
The package implements MBASED algorithm for detecting allele-specific gene expression from RNA count data, where allele counts at individual loci (SNVs) are integrated into a gene-specific measure of ASE, and utilizes simulations to appropriately assess the statistical significance of observed ASE.
Author: Oleg Mayba, Houston Gilbert
Maintainer: Oleg Mayba <mayba.oleg at gene.com>
Citation (from within R,
enter citation("MBASED")):
Installation
To install this package, start R and enter:
## try http:// if https:// URLs are not supported
source("https://bioconductor.org/biocLite.R")
biocLite("MBASED")
Documentation
To view documentation for the version of this package installed in your system, start R and enter:
browseVignettes("MBASED")
| R Script | MBASED | |
| Reference Manual | ||
| Text | NEWS |
Details
| biocViews | GeneExpression, Sequencing, Software, Transcription |
| Version | 1.10.0 |
| In Bioconductor since | BioC 3.0 (R-3.1) (3 years) |
| License | Artistic-2.0 |
| Depends | RUnit, BiocGenerics, BiocParallel, GenomicRanges, SummarizedExperiment |
| Imports | |
| LinkingTo | |
| Suggests | BiocStyle |
| SystemRequirements | |
| Enhances | |
| URL | |
| Depends On Me | |
| Imports Me | |
| Suggests Me | |
| Build Report |
Package Archives
Follow Installation instructions to use this package in your R session.
| Source Package | MBASED_1.10.0.tar.gz |
| Windows Binary | MBASED_1.10.0.zip |
| Mac OS X 10.11 (El Capitan) | MBASED_1.10.0.tgz |
| Source Repository | git clone https://git.bioconductor.org/packages/MBASED |
| Package Short Url | http://bioconductor.org/packages/MBASED/ |
| Package Downloads Report | Download Stats |
Documentation »
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