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To install this package, start R and enter:
## try http:// if https:// URLs are not supported
source("https://bioconductor.org/biocLite.R")
biocLite("ImmuneSpaceR")
In most cases, you don't need to download the package archive at all.
ImmuneSpaceR
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A Thin Wrapper around the ImmuneSpace Database
Bioconductor version: Release (3.5)
Provides a convenient API for accessing data sets within ImmuneSpace (www.immunespace.org), the data repository and analysis platform of the Human Immunology Project Consortium (HIPC).
Author: Greg Finak, Renan Sauteraud, Mike Jiang, Gil Guday, Leo Dashevskiy, Evan Henrich, Ju Yeong Kim
Maintainer: ImmuneSpace Package Maintainer <immunespace at gmail.com>
Citation (from within R,
enter citation("ImmuneSpaceR")):
Installation
To install this package, start R and enter:
## try http:// if https:// URLs are not supported
source("https://bioconductor.org/biocLite.R")
biocLite("ImmuneSpaceR")
Documentation
| HTML | R Script | An introduction to the ImmuneSpaceR package |
| HTML | R Script | Downloading tables with getDataset |
| HTML | R Script | Handling expression matrices with ImmuneSpaceR |
| HTML | R Script | Reproducing an online report using ImmuneSpaceR: Correlation between HAI and flow cytometry in SDY269 |
| HTML | R Script | Reproducing an online report using ImmuneSpaceR: Correlation of HAI/virus neutralizition titer and cell counts in SDY144 |
| HTML | R Script | Reproducing an online report using ImmuneSpaceR: Plasmablast abundance in SDY180 |
| Reference Manual | ||
| Text | NEWS |
Details
| biocViews | DataImport, DataRepresentation, Software, ThirdPartyClient |
| Version | 1.4.0 |
| In Bioconductor since | BioC 3.3 (R-3.3) (1.5 years) |
| License | GPL-2 |
| Depends | |
| Imports | methods, data.table, RCurl, Rlabkey (>= 2.1.127), Biobase, pheatmap, ggplot2, scales, stats, gtools, gplots, reshape2, plotly, heatmaply (>= 0.7.0), rjson, rmarkdown |
| LinkingTo | |
| Suggests | knitr, testthat |
| SystemRequirements | |
| Enhances | |
| URL | https://github.com/RGLab/ImmuneSpaceR |
| BugReports | https://github.com/RGLab/ImmuneSpaceR/issues |
| Depends On Me | |
| Imports Me | |
| Suggests Me | |
| Build Report |
Package Archives
Follow Installation instructions to use this package in your R session.
| Source Package | ImmuneSpaceR_1.4.0.tar.gz |
| Windows Binary | ImmuneSpaceR_1.4.0.zip |
| Mac OS X 10.11 (El Capitan) | ImmuneSpaceR_1.4.0.tgz |
| Source Repository | git clone https://git.bioconductor.org/packages/ImmuneSpaceR |
| Package Short Url | http://bioconductor.org/packages/ImmuneSpaceR/ |
| Package Downloads Report | Download Stats |
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