To install this package, start R and enter:

## try http:// if https:// URLs are not supported
source("https://bioconductor.org/biocLite.R")
biocLite("GenomicScores")

In most cases, you don't need to download the package archive at all.

GenomicScores

Infrastructure to work with genomewide position-specific scores

Bioconductor version: Release (3.5)

Provide infrastructure to store and access genomewide position-specific scores within R and Bioconductor.

Author: Robert Castelo [aut, cre], Pau Puigdevall [ctb]

Maintainer: Robert Castelo <robert.castelo at upf.edu>

Citation (from within R, enter citation("GenomicScores")):

To install this package, start R and enter:

## try http:// if https:// URLs are not supported
source("https://bioconductor.org/biocLite.R")
biocLite("GenomicScores")

HTML	R Script	An introduction to the GenomicScores package
PDF		Reference Manual
Text		NEWS

biocViews	Annotation, Coverage, Genetics, Infrastructure, Sequencing, Software
Version	1.0.2
In Bioconductor since	BioC 3.5 (R-3.4) (0.5 years)
License	Artistic-2.0
Depends	R (>= 3.4), S4Vectors(>= 0.7.21), GenomicRanges, methods, BiocGenerics(>= 0.13.8)
Imports	utils, XML, IRanges(>= 2.3.23), BSgenome, GenomeInfoDb, AnnotationHub
LinkingTo
Suggests	BiocStyle, knitr, rmarkdown, BSgenome.Hsapiens.UCSC.hg19, phastCons100way.UCSC.hg19, VariantAnnotation, TxDb.Hsapiens.UCSC.hg19.knownGene
SystemRequirements
Enhances
URL	https://github.com/rcastelo/GenomicScores
BugReports	https://github.com/rcastelo/GenomicScores/issues
Depends On Me	fitCons.UCSC.hg19, phastCons100way.UCSC.hg19, phastCons100way.UCSC.hg38, phastCons7way.UCSC.hg38
Imports Me	ATACseqQC, RareVariantVis, VariantFiltering
Suggests Me
Build Report

Follow Installation instructions to use this package in your R session.

Source Package	GenomicScores_1.0.2.tar.gz
Windows Binary	GenomicScores_1.0.2.zip
Mac OS X 10.11 (El Capitan)	GenomicScores_1.0.2.tgz
Source Repository	git clone https://git.bioconductor.org/packages/GenomicScores
Package Short Url	http://bioconductor.org/packages/GenomicScores/
Package Downloads Report	Download Stats

Documentation »

Bioconductor

R / CRAN packages and documentation

Please read the posting guide. Post questions about Bioconductor to one of the following locations: