Package: cellscape
Title: Explores single cell copy number profiles in the context of a
        single cell tree
Version: 1.0.0
Authors@R: person("Maia", "Smith", email = "maiaannesmith@gmail.com",
        role = c("aut", "cre"))
Description: CellScape facilitates interactive browsing of single cell
        clonal evolution datasets. The tool requires two main inputs:
        (i) the genomic content of each single cell in the form of
        either copy number segments or targeted mutation values, and
        (ii) a single cell phylogeny. Phylogenetic formats can vary
        from dendrogram-like phylogenies with leaf nodes to
        evolutionary model-derived phylogenies with observed or latent
        internal nodes. The CellScape phylogeny is flexibly input as a
        table of source-target edges to support arbitrary
        representations, where each node may or may not have associated
        genomic data. The output of CellScape is an interactive
        interface displaying a single cell phylogeny and a
        cell-by-locus genomic heatmap representing the mutation status
        in each cell for each locus.
Depends: R (>= 3.3)
Imports: htmlwidgets (>= 0.5), jsonlite (>= 0.9.19), reshape2 (>=
        1.4.1), stringr (>= 1.0.0), plyr (>= 1.8.3), dplyr (>= 0.4.3),
        gtools (>= 3.5.0)
biocViews: Visualization
License: GPL-3
LazyData: true
RoxygenNote: 6.0.1
Suggests: knitr, rmarkdown
VignetteBuilder: knitr
NeedsCompilation: no
Packaged: 2017-04-25 01:49:35 UTC; biocbuild
Author: Maia Smith [aut, cre]
Maintainer: Maia Smith <maiaannesmith@gmail.com>
Built: R 3.4.0; ; 2017-04-25 02:50:28 UTC; windows
