Bam_Handler | A class to manage BAM files. |
get_demo_bam_files | Get BAM filenames for demo |
get_demo_design | Get a demo design object |
get_demo_metagene | Get a demo metagene object |
get_demo_regions | Get regions filenames for demo |
get_promoters_txdb | Extract Entrez genes promoters from TxDb object. |
metagene | A class to manage metagene analysis. |
permutation_test | Perform a permutation test on 2 matrices |
plot_metagene | Produce a metagene plot |
promoters_hg18 | Promoters regions of hg18 Entrez genes. |
promoters_hg19 | Promoters regions of hg19 Entrez genes. |
promoters_mm10 | Promoters regions of mm10 Entrez genes. |
promoters_mm9 | Promoters regions of mm9 Entrez genes. |