A package to produce metagene plots


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Documentation for package ‘metagene’ version 2.8.0

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Bam_Handler A class to manage BAM files.
get_demo_bam_files Get BAM filenames for demo
get_demo_design Get a demo design object
get_demo_metagene Get a demo metagene object
get_demo_regions Get regions filenames for demo
get_promoters_txdb Extract Entrez genes promoters from TxDb object.
metagene A class to manage metagene analysis.
permutation_test Perform a permutation test on 2 matrices
plot_metagene Produce a metagene plot
promoters_hg18 Promoters regions of hg18 Entrez genes.
promoters_hg19 Promoters regions of hg19 Entrez genes.
promoters_mm10 Promoters regions of mm10 Entrez genes.
promoters_mm9 Promoters regions of mm9 Entrez genes.