StarBioTrek


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Documentation for package ‘StarBioTrek’ version 1.2.1

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StarBioTrek-package Download data
average For TCGA data get human pathway data and creates a matrix with the average of genes for each pathway.
ds_score_crtlk For TCGA data get human pathway data and creates a measure of discriminating score among pathways
euc_dist_crtlk For TCGA data get human pathway data and creates a measure of cross-talk among pathways
getKEGGdata Get human KEGG pathway data.
getNETdata Get network data.
GE_matrix Get human KEGG pathway data and a gene expression matrix in order to obtain a matrix with the gene expression for only pathways given in input .
list_path_net Get human KEGG pathway data and output of path_net in order to define the common genes.
matrix_plot Get human KEGG pathway data and a gene expression matrix in order to obtain a matrix with the mean gene expression for only pathways given in input .
path_net Get human KEGG pathway data and network data in order to define the common gene.
plotting_cross_talk Get human KEGG pathway data and a gene expression matrix we obtain a matrix with the gene expression for only pathways given in input .
process_matrix Process matrix TCGA data after the selection of pairwise pathway
proc_path Get human KEGG pathway data.
SelectedSample Select the class of TCGA data
select_class Select the class of TCGA data
StarBioTrek Download data
st_dv For TCGA data get human pathway data and creates a measure of standard deviations among pathways
svm_classification SVM classification for each feature