To install this package, start R and enter:

## try http:// if https:// URLs are not supported
source("https://bioconductor.org/biocLite.R")
biocLite("HDF5Array")

In most cases, you don't need to download the package archive at all.

HDF5Array

   

This package is for version 3.4 of Bioconductor; for the stable, up-to-date release version, see HDF5Array.

An array-like container for convenient access and manipulation of HDF5 datasets

Bioconductor version: 3.4

This package implements the HDF5Array class for convenient access and manipulation of HDF5 datasets. In order to reduce memory usage and optimize performance, operations on an HDF5Array object are either delayed or executed using a block processing mechanism. The delaying and block processing mechanisms are independent of the on-disk backend and implemented via the DelayedArray class. They even work on in-memory array-like objects like DataFrame objects (typically with Rle columns), Matrix objects, or ordinary arrays or data frames, where they can improve performance.

Author: Hervé Pagès

Maintainer: Hervé Pagès <hpages at fredhutch.org>

Citation (from within R, enter citation("HDF5Array")):

Installation

To install this package, start R and enter:

## try http:// if https:// URLs are not supported
source("https://bioconductor.org/biocLite.R")
biocLite("HDF5Array")

Documentation

PDF   Reference Manual

Details

biocViews Annotation, Coverage, DataRepresentation, GenomeAnnotation, Infrastructure, Sequencing, Software
Version 1.2.1
In Bioconductor since BioC 3.3 (R-3.3) (1 year)
License Artistic-2.0
Depends R (>= 3.2), methods, BiocGenerics(>= 0.15.3), S4Vectors(>= 0.9.43), IRanges(>= 2.7.6)
Imports stats, rhdf5
LinkingTo
Suggests Matrix, h5vcData, SummarizedExperiment, GenomicRanges, genefilter, BiocStyle, knitr, rmarkdown
SystemRequirements
Enhances
URL
Depends On Me
Imports Me
Suggests Me MultiAssayExperiment
Build Report  

Package Archives

Follow Installation instructions to use this package in your R session.

Package Source HDF5Array_1.2.1.tar.gz
Windows Binary HDF5Array_1.2.1.zip
Mac OS X 10.9 (Mavericks) HDF5Array_1.2.1.tgz
Subversion source (username/password: readonly)
Git source https://github.com/Bioconductor-mirror/HDF5Array/tree/release-3.4
Package Short Url http://bioconductor.org/packages/HDF5Array/
Package Downloads Report Download Stats

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