Discovering disease-disease simialrties can be useful for us to inferring the mechanisms of complex diseases. Disease similarity has become the important basis in disease-related molecular function research. There have been a number of methods proposed for measuring disease similarity in recent years. But there are lacks of tools or web servers for the computation of these methods. We present an R package dSimer which provides computation of nine methods for measuring disease-disease similarity, including a standard cosine similarity measure and eight function-based methods. The disease similarity matrix obtained from these nine methods can be visualized through heatmap and network. Biological data widely used in disease-disease associations study are also provided by dSimer.
The quantification of similarity among diseases has drawn more and more attention in modern biology and medicine. Understanding similarity among diseases can not only help us gain deeper insights into complex diseases, but also lead to improvements in disease diagnosis, drug repurposing and new drug development. Due to the growing body of high-throughput biological data such as genomic and proteomic data, a number of methods have been proposed for the computation of similarity among diseases during the past decade.
Here we present dSimer for the calculation of nine disease similarity methods, including one standard cosine similarity method [1, 2] and eight function-based methods which compare disease-related gene set for calculating [3]. Besides, we also implemented methods for the visualization of disease similarity matrix.
To start with dSimer package, type following codes below:
library(dSimer)
help("dSimer")
The cosine similarity method is a widely used standard measure in disease association analyses [1, 2]. First it constructs feature vectors for diseases from literature or by using other biological data. Then it calculate the cosine of the angle between normalized vector pairs as the similarity scores between diseases. We implemented function CosineDFV for this method:
data(d2s_hsdn) #get disease-symptom associations for constructing feature vectors
ds <- sample(unique(d2s_hsdn[,2]), 5) #get disease names sample
simmat <- CosineDFV(ds, ds, d2s_hsdn)
simmat
## Lupus Nephritis
## Lupus Nephritis 1.0000000000
## Uterine Cervical Diseases 0.0007900049
## Tuberculosis 0.0396889804
## Silo Fillers Disease\t1\t1.3147291510963324\nCough\tAnti-Glomerular Basement Membrane Disease\t3\t3.944187453288997\nCough\tHistiocytosis, Langerhans-Cell\t10\t13.147291510963324\nCough\tIdiopathic Pulmonary Fibrosis\t29\t38.12714538179364\nCough\tPneumoconiosis\t19\t24.979853870830315\nCough\tAsbestosis\t9\t11.83256235986699\nCough\tByssinosis\t4\t5.2589166043853295\nCough\tSilicosis\t8\t10.517833208770659\nCough\tSarcoidosis, Pulmonary\t20\t26.29458302192665\nCough\tWegener Granulomatosis\t9\t11.83256235986699\nCough\tLung Diseases, Obstructive\t93\t122.26981105195891\nCough\tPulmonary Disease, Chronic Obstructive\t90\t118.3256235986699\nCough\tLung Injury\t1\t1.3147291510963324\nCough\tMeconium Aspiration Syndrome\t1\t1.3147291510963324\nCough\tBronchopulmonary Dysplasia\t2\t2.6294583021926647\nCough\tPneumonia\t95\t124.89926935415157\nCough\tPleuropneumonia\t1\t1.3147291510963324\nCough\tPneumonia, Aspiration\t35\t46.01552028837163\nCough\tPneumonia, Lipid\t5\t6.573645755481662\nCough\tPulmonary Alveolar Proteinosis\t7\t9.203104057674327\nCough\tPulmonary Atelectasis\t20\t26.29458302192665\nCough\tMiddle Lobe Syndrome\t5\t6.573645755481662\nCough\tPulmonary Edema\t21\t27.60931217302298\nCough\tPulmonary Embolism\t22\t28.92404132411931\nCough\tPulmonary Emphysema\t31\t40.756603683986306\nCough\tLung, Hyperlucent\t1\t1.3147291510963324\nCough\tPulmonary Eosinophilia\t30\t39.44187453288997\nCough\tPulmonary Fibrosis\t27\t35.49768707960097\nCough\tPulmonary Veno-Occlusive Disease\t1\t1.3147291510963324\nCough\tRespiratory Distress Syndrome, Adult\t8\t10.517833208770659\nCough\tRespiratory Distress Syndrome, Newborn\t6\t7.888374906577994\nCough\tScimitar Syndrome\t2\t2.6294583021926647\nCough\tNose Diseases\t6\t7.888374906577994\nCough\tEpistaxis\t2\t2.6294583021926647\nCough\tNasal Obstruction\t4\t5.2589166043853295\nCough\tNasal Polyps\t1\t1.3147291510963324\nCough\tParanasal Sinus Diseases\t3\t3.944187453288997\nCough\tSinusitis\t46\t60.47754095043129\nCough\tMaxillary Sinusitis\t2\t2.6294583021926647\nCough\tRhinitis\t54\t70.99537415920194\nCough\tRhinitis, Allergic, Perennial\t18\t23.66512471973398\nCough\tRhinitis, Allergic, Seasonal\t24\t31.553499626311975\nCough\tRhinitis, Atrophic\t1\t1.3147291510963324\nCough\tRhinitis, Vasomotor\t1\t1.3147291510963324\nCough\tPleural Diseases\t11\t14.462020662059656\nCough\tChylothorax\t1\t1.3147291510963324\nCough\tHydrothorax\t2\t2.6294583021926647\nCough\tPleural Effusion\t21\t27.60931217302298\nCough\tPleurisy\t9\t11.83256235986699\nCough\tPneumothorax\t23\t30.238770475215645\nCough\tRespiration Disorders\t72\t94.66049887893593\nCough\tAltitude Sickness\t5\t6.573645755481662\nCough\tApnea\t9\t11.83256235986699\nCough\tSleep Apnea Syndromes\t13\t17.09147896425232\nCough\tSleep Apnea, Central\t1\t1.3147291510963324\nCough\tSleep Apnea, Obstructive\t5\t6.573645755481662\nCough\tCough\t4598\t6045.124636740937\nCough\tDyspnea\t155\t203.78301841993152\nCough\tDyspnea, Paroxysmal\t2\t2.6294583021926647\nCough\tHyperventilation\t10\t13.147291510963324\nCough\tMouth Breathing\t2\t2.6294583021926647\nCough\tRespiratory Aspiration\t13\t17.09147896425232\nCough\tRespiratory Insufficiency\t60\t78.88374906577994\nCough\tAirway Obstruction\t70\t92.03104057674327\nCough\tHypoventilation\t2\t2.6294583021926647\nCough\tRespiratory Paralysis\t4\t5.2589166043853295\nCough\tRespiratory Hypersensitivity\t52\t68.36591585700928\nCough\tRespiratory System Abnormalities\t1\t1.3147291510963324\nCough\tBronchopulmonary Sequestration\t4\t5.2589166043853295\nCough\tRespiratory Tract Fistula\t3\t3.944187453288997\nCough\tEpiglottitis\t4\t5.2589166043853295\nCough\tTracheitis\t10\t13.147291510963324\nCough\tThoracic Diseases\t7\t9.203104057674327\nCough\tMediastinal Diseases\t8\t10.517833208770659\nCough\tMediastinal Emphysema\t20\t26.29458302192665\nCough\tMediastinitis\t1\t1.3147291510963324\nCough\tTracheal Diseases\t52\t68.36591585700928\nCough\tTracheal Stenosis\t14\t18.406208115348655\nCough\tEar Diseases\t1\t1.3147291510963324\nCough\tEarache\t2\t2.6294583021926647\nCough\tHearing Loss, Bilateral\t1\t1.3147291510963324\nCough\tHearing Loss, Functional\t1\t1.3147291510963324\nCough\tLabyrinth Diseases\t1\t1.3147291510963324\nCough\tVertigo\t1\t1.3147291510963324\nCough\tOtitis\t1\t1.3147291510963324\nCough\tOtitis Externa\t1\t1.3147291510963324\nCough\tOtitis Media\t5\t6.573645755481662\nCough\tOtitis Media with Effusion\t1\t1.3147291510963324\nCough\tMultiple Sclerosis\t6\t7.888374906577994\nCough\tMyasthenia Gravis\t1\t1.3147291510963324\nCough\tGuillain-Barre Syndrome\t2\t2.6294583021926647\nCough\tHereditary Sensory and Autonomic Neuropathies\t3\t3.944187453288997\nCough\tGiant Cell Arteritis\t26\t34.18295792850464\nCough\tAutonomic Nervous System Diseases\t4\t5.2589166043853295\nCough\tAdie Syndrome\t4\t5.2589166043853295\nCough\tHypotension, Orthostatic\t1\t1.3147291510963324\nCough\tSyncope, Vasovagal\t2\t2.6294583021926647\nCough\tCentral Nervous System Diseases\t1\t1.3147291510963324\nCough\tBrain Diseases\t3\t3.944187453288997\nCough\tParkinson Disease\t11\t14.462020662059656\nCough\tParkinson Disease, Postencephalitic\t1\t1.3147291510963324\nCough\tSupranuclear Palsy, Progressive\t1\t1.3147291510963324\nCough\tTourette Syndrome\t4\t5.2589166043853295\nCough\tCerebral Palsy\t4\t5.2589166043853295\nCough\tBrain Death\t1\t1.3147291510963324\nCough\tBrain Diseases, Metabolic, Inborn\t1\t1.3147291510963324\nCough\tGlycogen Storage Disease Type II\t2\t2.6294583021926647\nCough\tNiemann-Pick Disease, Type B\t1\t1.3147291510963324\nCough\tBrain Edema\t1\t1.3147291510963324\nCough\tBrain Injuries\t2\t2.6294583021926647\nCough\tPneumocephalus\t3\t3.944187453288997\nCough\tCerebellar Diseases\t1\t1.3147291510963324\nCough\tCerebellar Ataxia\t1\t1.3147291510963324\nCough\tAtaxia Telangiectasia\t1\t1.3147291510963324\nCough\tCerebrovascular Disorders\t7\t9.203104057674327\nCough\tBrain Ischemia\t3\t3.944187453288997\nCough\tBrain Infarction\t1\t1.3147291510963324\nCough\tBrain Stem Infarctions\t1\t1.3147291510963324\nCough\tLateral Medullary Syndrome\t1\t1.3147291510963324\nCough\tCerebral Infarction\t18\t23.66512471973398\nCough\tInfarction, Middle Cerebral Artery\t1\t1.3147291510963324\nCough\tIschemic Attack, Transient\t1\t1.3147291510963324\nCough\tCarotid Artery Diseases\t4\t5.2589166043853295\nCough\tCarotid Artery Thrombosis\t1\t1.3147291510963324\nCough\tCarotid Stenosis\t1\t1.3147291510963324\nCough\tVertebral Artery Dissection\t1\t1.3147291510963324\nCough\tIntracranial Aneurysm\t2\t2.6294583021926647\nCough\tIntracranial Arteriosclerosis\t1\t1.3147291510963324\nCough\tIntracranial Arteriovenous Malformations\t1\t1.3147291510963324\nCough\tIntracranial Embolism and Thrombosis\t2\t2.6294583021926647\nCough\tIntracranial Embolism\t3\t3.944187453288997\nCough\tCerebral Hemorrhage\t4\t5.2589166043853295\nCough\tHematoma, Epidural, Cranial\t2\t2.6294583021926647\nCough\tHematoma, Subdural\t2\t2.6294583021926647\nCough\tSubarachnoid Hemorrhage\t2\t2.6294583021926647\nCough\tStroke\t15\t19.720937266444984\nCough\tVascular Headaches\t1\t1.3147291510963324\nCough\tDementia\t1\t1.3147291510963324\nCough\tCreutzfeldt-Jakob Syndrome\t2\t2.6294583021926647\nCough\tMeningoencephalitis\t2\t2.6294583021926647\nCough\tEpilepsy\t11\t14.462020662059656\nCough\tEpilepsies, Partial\t3\t3.944187453288997\nCough\tEpilepsy, Temporal Lobe\t3\t3.944187453288997\nCough\tSeizures\t10\t13.147291510963324\nCough\tHeadache Disorders\t1\t1.3147291510963324\nCough\tHeadache Disorders, Primary\t2\t2.6294583021926647\nCough\tMigraine Disorders\t4\t5.2589166043853295\nCough\tMigraine without Aura\t1\t1.3147291510963324\nCough\tTension-Type Headache\t1\t1.3147291510963324\nCough\tCluster Headache\t2\t2.6294583021926647\nCough\tParoxysmal Hemicrania\t1\t1.3147291510963324\nCough\tHydrocephalus\t4\t5.2589166043853295\nCough\tHypoxia, Brain\t2\t2.6294583021926647\nCough\tIntracranial Hypertension\t1\t1.3147291510963324\nCough\tHypertensive Encephalopathy\t1\t1.3147291510963324\nCough\tPseudotumor Cerebri\t2\t2.6294583021926647\nCough\tIntracranial Hypotension\t2\t2.6294583021926647\nCough\tSubdural Effusion\t1\t1.3147291510963324\nCough\tMovement Disorders\t2\t2.6294583021926647\nCough\tDyskinesias\t1\t1.3147291510963324\nCough\tTorticollis\t2\t2.6294583021926647\nCough\tEssential Tremor\t1\t1.3147291510963324\nCough\tTic Disorders\t8\t10.517833208770659\nCough\tSpinal Cord Diseases\t2\t2.6294583021926647\nCough\tAmyotrophic Lateral Sclerosis\t18\t23.66512471973398\nCough\tMuscular Atrophy, Spinal\t1\t1.3147291510963324\nCough\tSpinal Muscular Atrophies of Childhood\t3\t3.944187453288997\nCough\tSpinal Cord Injuries\t18\t23.66512471973398\nCough\tSyringomyelia\t5\t6.573645755481662\nCough\tCranial Nerve Diseases\t2\t2.6294583021926647\nCough\tHypoglossal Nerve Diseases\t1\t1.3147291510963324\nCough\tNystagmus, Pathologic\t2\t2.6294583021926647\nCough\tOptic Nerve Diseases\t2\t2.6294583021926647\nCough\tOptic Neuritis\t1\t1.3147291510963324\nCough\tTrigeminal Neuralgia\t1\t1.3147291510963324\nCough\tVagus Nerve Diseases\t6\t7.888374906577994\nCough\tHereditary Sensory and Motor Neuropathy\t3\t3.944187453288997\nCough\tArnold-Chiari Malformation\t14\t18.406208115348655\nCough\tMeningocele\t1\t1.3147291510963324\nCough\tMotor Neuron Disease\t3\t3.944187453288997\nCough\tBulbar Palsy, Progressive\t2\t2.6294583021926647\nCough\tDecerebrate State\t8\t10.517833208770659\nCough\tDystonia\t1\t1.3147291510963324\nCough\tMyoclonus\t1\t1.3147291510963324\nCough\tPsychomotor Agitation\t1\t1.3147291510963324\nCough\tTics\t1\t1.3147291510963324\nCough\tLanguage Disorders\t1\t1.3147291510963324\nCough\tSpeech Disorders\t1\t1.3147291510963324\nCough\tMutism\t1\t1.3147291510963324\nCough\tConfusion\t2\t2.6294583021926647\nCough\tDelirium\t1\t1.3147291510963324\nCough\tConsciousness Disorders\t6\t7.888374906577994\nCough\tUnconsciousness\t2\t2.6294583021926647\nCough\tComa\t3\t3.944187453288997\nCough\tSyncope\t110\t144.62020662059655\nCough\tMemory Disorders\t1\t1.3147291510963324\nCough\tAmnesia\t1\t1.3147291510963324\nCough\tMental Retardation\t1\t1.3147291510963324\nCough\tDown Syndrome\t3\t3.944187453288997\nCough\tHallucinations\t2\t2.6294583021926647\nCough\tNeurogenic Inflammation\t1\t1.3147291510963324\nCough\tMuscular Atrophy\t1\t1.3147291510963324\nCough\tSpasm\t1\t1.3147291510963324\nCough\tPain\t30\t39.44187453288997\nCough\tBack Pain\t4\t5.2589166043853295\nCough\tHeadache\t43\t56.53335349714229\nCough\tNeck Pain\t1\t1.3147291510963324\nCough\tSciatica\t1\t1.3147291510963324\nCough\tParalysis\t2\t2.6294583021926647\nCough\tHemiplegia\t2\t2.6294583021926647\nCough\tParaplegia\t4\t5.2589166043853295\nCough\tQuadriplegia\t14\t18.406208115348655\nCough\tTonic Pupil\t2\t2.6294583021926647\nCough\tSensation Disorders\t1\t1.3147291510963324\nCough\tDizziness\t3\t3.944187453288997\nCough\tOlfaction Disorders\t1\t1.3147291510963324\nCough\tParesthesia\t1\t1.3147291510963324\nCough\tDysgeusia\t1\t1.3147291510963324\nCough\tVision Disorders\t1\t1.3147291510963324\nCough\tBlindness\t4\t5.2589166043853295\nCough\tNeuromuscular Diseases\t36\t47.33024943946796\nCough\tPeripheral Nervous System Diseases\t4\t5.2589166043853295\nCough\tDiabetic Neuropathies\t7\t9.203104057674327\nCough\tMononeuropathies\t1\t1.3147291510963324\nCough\tNerve Compression Syndromes\t4\t5.2589166043853295\nCough\tThoracic Outlet Syndrome\t1\t1.3147291510963324\nCough\tNeuritis\t1\t1.3147291510963324\nCough\tPOEMS Syndrome\t1\t1.3147291510963324\nCough\tNeurotoxicity Syndromes\t1\t1.3147291510963324\nCough\tArsenic Poisoning\t2\t2.6294583021926647\nCough\tSleep Disorders\t7\t9.203104057674327\nCough\tSleep Initiation and Maintenance Disorders\t4\t5.2589166043853295\nCough\tCraniocerebral Trauma\t4\t5.2589166043853295\nCough\tShaken Baby Syndrome\t1\t1.3147291510963324\nCough\tSkull Fractures\t1\t1.3147291510963324\nCough\tConjunctival Diseases\t1\t1.3147291510963324\nCough\tConjunctivitis\t4\t5.2589166043853295\nCough\tConjunctivitis, Allergic\t1\t1.3147291510963324\nCough\tKeratitis\t1\t1.3147291510963324\nCough\tChoroid Hemorrhage\t1\t1.3147291510963324\nCough\tRetinal Hemorrhage\t3\t3.944187453288997\nCough\tEyelid Diseases\t1\t1.3147291510963324\nCough\tBlepharoptosis\t1\t1.3147291510963324\nCough\tLacrimal Apparatus Diseases\t2\t2.6294583021926647\nCough\tGlaucoma\t3\t3.944187453288997\nCough\tGlaucoma, Open-Angle\t1\t1.3147291510963324\nCough\tOcular Hypotension\t1\t1.3147291510963324\nCough\tOrbital Diseases\t3\t3.944187453288997\nCough\tExophthalmos\t2\t2.6294583021926647\nCough\tMyopia\t1\t1.3147291510963324\nCough\tDiabetic Retinopathy\t1\t1.3147291510963324\nCough\tIris Diseases\t1\t1.3147291510963324\nCough\tGenital Diseases, Male\t1\t1.3147291510963324\nCough\tHemospermia\t1\t1.3147291510963324\nCough\tProstatic Hyperplasia\t2\t2.6294583021926647\nCough\tUrologic Diseases\t1\t1.3147291510963324\nCough\tKidney Diseases\t2\t2.6294583021926647\nCough\tDiabetes Insipidus\t1\t1.3147291510963324\nCough\tDiabetes Insipidus, Neurogenic\t1\t1.3147291510963324\nCough\tDiabetic Nephropathies\t1\t1.3147291510963324\nCough\tGlomerulonephritis\t2\t2.6294583021926647\nCough\tGlomerulonephritis, Membranoproliferative\t1\t1.3147291510963324\nCough\tNephrotic Syndrome\t2\t2.6294583021926647\nCough\tRenal Artery Obstruction\t1\t1.3147291510963324\nCough\tRenal Insufficiency\t1\t1.3147291510963324\nCough\tAcute Kidney Injury\t4\t5.2589166043853295\nCough\tKidney Failure, Chronic\t6\t7.888374906577994\nCough\tUrethral Diseases\t1\t1.3147291510963324\nCough\tUrinary Bladder Neck Obstruction\t1\t1.3147291510963324\nCough\tUrinary Bladder, Overactive\t2\t2.6294583021926647\nCough\tUrination Disorders\t6\t7.888374906577994\nCough\tHematuria\t1\t1.3147291510963324\nCough\tOliguria\t1\t1.3147291510963324\nCough\tAlbuminuria\t2\t2.6294583021926647\nCough\tUrinary Incontinence\t28\t36.81241623069731\nCough\tUrinary Incontinence, Stress\t99\t130.1581859585369\nCough\tUrinary Incontinence, Urge\t1\t1.3147291510963324\nCough\tFemale Urogenital Diseases\t1\t1.3147291510963324\nCough\tFallopian Tube Diseases\t1\t1.3147291510963324\nCough\tAnovulation\t1\t1.3147291510963324\nCough\tOvarian Hyperstimulation Syndrome\t1\t1.3147291510963324\nCough\tEndometriosis\t4\t5.2589166043853295\nCough\tInfertility, Female\t1\t1.3147291510963324\nCough\tUterine Cervical Incompetence\t1\t1.3147291510963324\nCough\tUterine Prolapse\t4\t5.2589166043853295\nCough\tVaginal Diseases\t2\t2.6294583021926647\nCough\tPregnancy Complications\t5\t6.573645755481662\nCough\tAbruptio Placentae\t1\t1.3147291510963324\nCough\tFetal Membranes, Premature Rupture\t1\t1.3147291510963324\nCough\tPregnancy Complications, Cardiovascular\t1\t1.3147291510963324\nCough\tPregnancy in Diabetics\t1\t1.3147291510963324\nCough\tPuerperal Disorders\t3\t3.944187453288997\nCough\tCardiovascular Abnormalities\t2\t2.6294583021926647\nCough\tHeart Defects, Congenital\t1\t1.3147291510963324\nCough\tCoronary Vessel Anomalies\t1\t1.3147291510963324\nCough\tHeart Septal Defects\t1\t1.3147291510963324\nCough\tHeart Septal Defects, Atrial\t11\t14.462020662059656\nCough\tHeart Septal Defects, Ventricular\t1\t1.3147291510963324\nCough\tTetralogy of Fallot\t1\t1.3147291510963324\nCough\tTransposition of Great Vessels\t1\t1.3147291510963324\nCough\tVascular Malformations\t1\t1.3147291510963324\nCough\tArteriovenous Malformations\t2\t2.6294583021926647\nCough\tVascular Fistula\t1\t1.3147291510963324\nCough\tArterio-Arterial Fistula\t1\t1.3147291510963324\nCough\tHeart Diseases\t11\t14.462020662059656\nCough\tArrhythmias, Cardiac\t15\t19.720937266444984\nCough\tSick Sinus Syndrome\t1\t1.3147291510963324\nCough\tAtrial Fibrillation\t3\t3.944187453288997\nCough\tBradycardia\t1\t1.3147291510963324\nCough\tAtrial Premature Complexes\t3\t3.944187453288997\nCough\tVentricular Premature Complexes\t4\t5.2589166043853295\nCough\tHeart Block\t8\t10.517833208770659\nCough\tAtrioventricular Block\t3\t3.944187453288997\nCough\tLong QT Syndrome\t2\t2.6294583021926647\nCough\tTachycardia\t8\t10.517833208770659\nCough\tTachycardia, Paroxysmal\t1\t1.3147291510963324\nCough\tTachycardia, Supraventricular\t2\t2.6294583021926647\nCough\tTachycardia, Ectopic Atrial\t1\t1.3147291510963324\nCough\tTachycardia, Ventricular\t2\t2.6294583021926647\nCough\tTorsades de Pointes\t1\t1.3147291510963324\nCough\tVentricular Fibrillation\t11\t14.462020662059656\nCough\tCardiac Output, Low\t3\t3.944187453288997\nCough\tCardiac Tamponade\t1\t1.3147291510963324\nCough\tCardiomegaly\t1\t1.3147291510963324\nCough\tHypertrophy, Left Ventricular\t2\t2.6294583021926647\nCough\tHypertrophy, Right Ventricular\t1\t1.3147291510963324\nCough\tCardiomyopathies\t4\t5.2589166043853295\nCough\tCardiomyopathy, Hypertrophic\t2\t2.6294583021926647\nCough\tCardiomyopathy, Restrictive\t1\t1.3147291510963324\nCough\tMyocardial Reperfusion Injury\t1\t1.3147291510963324\nCough\tMyocarditis\t4\t5.2589166043853295\nCough\tHeart Arrest\t11\t14.462020662059656\nCough\tHeart Failure\t31\t40.756603683986306\nCough\tAortic Valve Insufficiency\t2\t2.6294583021926647\nCough\tMitral Valve Prolapse\t1\t1.3147291510963324\nCough\tMitral Valve Insufficiency\t1\t1.3147291510963324\nCough\tMitral Valve Stenosis\t4\t5.2589166043853295\nCough\tTricuspid Valve Stenosis\t1\t1.3147291510963324\nCough\tMyocardial Ischemia\t2\t2.6294583021926647\nCough\tAngina Pectoris\t2\t2.6294583021926647\nCough\tAngina, Unstable\t1\t1.3147291510963324\nCough\tCoronary Disease\t7\t9.203104057674327\nCough\tCoronary Artery Disease\t7\t9.203104057674327\nCough\tMyocardial Infarction\t13\t17.09147896425232\nCough\tShock, Cardiogenic\t2\t2.6294583021926647\nCough\tPericardial Effusion\t3\t3.944187453288997\nCough\tPericarditis\t6\t7.888374906577994\nCough\tPericarditis, Constrictive\t3\t3.944187453288997\nCough\tPneumopericardium\t3\t3.944187453288997\nCough\tPulmonary Heart Disease\t6\t7.888374906577994\nCough\tVentricular Dysfunction, Left\t5\t6.573645755481662\nCough\tTakotsubo Cardiomyopathy\t1\t1.3147291510963324\nCough\tVentricular Outflow Obstruction\t1\t1.3147291510963324\nCough\tVascular Diseases\t2\t2.6294583021926647\nCough\tAneurysm\t5\t6.573645755481662\nCough\tAneurysm, Dissecting\t4\t5.2589166043853295\nCough\tAneurysm, False\t5\t6.573645755481662\nCough\tAneurysm, Ruptured\t2\t2.6294583021926647\nCough\tAortic Rupture\t3\t3.944187453288997\nCough\tAortic Aneurysm\t3\t3.944187453288997\nCough\tAortic Aneurysm, Thoracic\t9\t11.83256235986699\nCough\tAngioedema\t9\t11.83256235986699\nCough\tAortic Diseases\t1\t1.3147291510963324\nCough\tAortitis\t2\t2.6294583021926647\nCough\tArterial Occlusive Diseases\t4\t5.2589166043853295\nCough\tArteriosclerosis\t1\t1.3147291510963324\nCough\tArteritis\t2\t2.6294583021926647\nCough\tDiabetic Angiopathies\t1\t1.3147291510963324\nCough\tDiabetic Foot\t1\t1.3147291510963324\nCough\tEmbolism\t3\t3.944187453288997\nCough\tEmbolism, Air\t13\t17.09147896425232\nCough\tEmbolism, Fat\t1\t1.3147291510963324\nCough\tEmbolism, Paradoxical\t2\t2.6294583021926647\nCough\tVenous Thromboembolism\t1\t1.3147291510963324\nCough\tThrombosis\t3\t3.944187453288997\nCough\tVenous Thrombosis\t1\t1.3147291510963324\nCough\tThrombophlebitis\t3\t3.944187453288997\nCough\tEhlers-Danlos Syndrome\t2\t2.6294583021926647\nCough\tHypertension\t93\t122.26981105195891\nCough\tHypotension\t7\t9.203104057674327\nCough\tSuperior Vena Cava Syndrome\t4\t5.2589166043853295\nCough\tVaricose Veins\t3\t3.944187453288997\nCough\tVasculitis\t3\t3.944187453288997\nCough\tMucocutaneous Lymph Node Syndrome\t7\t9.203104057674327\nCough\tPurpura, Schoenlein-Henoch\t1\t1.3147291510963324\nCough\tChurg-Strauss Syndrome\t3\t3.944187453288997\nCough\tVasculitis, Leukocytoclastic, Cutaneous\t2\t2.6294583021926647\nCough\tVenous Insufficiency\t2\t2.6294583021926647\nCough\tHematologic Diseases\t1\t1.3147291510963324\nCough\tAnemia\t5\t6.573645755481662\nCough\tAnemia, Aplastic\t1\t1.3147291510963324\nCough\tAnemia, Sickle Cell\t13\t17.09147896425232\nCough\tSickle Cell Trait\t1\t1.3147291510963324\nCough\tbeta-Thalassemia\t2\t2.6294583021926647\nCough\tAnemia, Pernicious\t1\t1.3147291510963324\nCough\tAnemia, Refractory\t1\t1.3147291510963324\nCough\tBlood Coagulation Disorders\t1\t1.3147291510963324\nCough\tHemophilia A\t1\t1.3147291510963324\nCough\tWiskott-Aldrich Syndrome\t1\t1.3147291510963324\nCough\tEcchymosis\t2\t2.6294583021926647\nCough\tPurpura\t3\t3.944187453288997\nCough\tThrombocytopenia\t1\t1.3147291510963324\nCough\tAgammaglobulinemia\t2\t2.6294583021926647\nCough\tIgG Deficiency\t1\t1.3147291510963324\nCough\tMyelodysplastic Syndromes\t1\t1.3147291510963324\nCough\tPolycythemia Vera\t3\t3.944187453288997\nCough\tEosinophilia\t48\t63.10699925262395\nCough\tAngiolymphoid Hyperplasia with Eosinophilia\t2\t2.6294583021926647\nCough\tHypereosinophilic Syndrome\t6\t7.888374906577994\nCough\tLeukocytosis\t3\t3.944187453288997\nCough\tLymphocytosis\t2\t2.6294583021926647\nCough\tChediak-Higashi Syndrome\t1\t1.3147291510963324\nCough\tGranulomatous Disease, Chronic\t2\t2.6294583021926647\nCough\tJobs Syndrome 0.0000000000
## Mandibular Diseases 0.0018658317
## Uterine Cervical Diseases
## Lupus Nephritis 0.0007900049
## Uterine Cervical Diseases 1.0000000000
## Tuberculosis 0.0022674518
## Silo Fillers Disease\t1\t1.3147291510963324\nCough\tAnti-Glomerular Basement Membrane Disease\t3\t3.944187453288997\nCough\tHistiocytosis, Langerhans-Cell\t10\t13.147291510963324\nCough\tIdiopathic Pulmonary Fibrosis\t29\t38.12714538179364\nCough\tPneumoconiosis\t19\t24.979853870830315\nCough\tAsbestosis\t9\t11.83256235986699\nCough\tByssinosis\t4\t5.2589166043853295\nCough\tSilicosis\t8\t10.517833208770659\nCough\tSarcoidosis, Pulmonary\t20\t26.29458302192665\nCough\tWegener Granulomatosis\t9\t11.83256235986699\nCough\tLung Diseases, Obstructive\t93\t122.26981105195891\nCough\tPulmonary Disease, Chronic Obstructive\t90\t118.3256235986699\nCough\tLung Injury\t1\t1.3147291510963324\nCough\tMeconium Aspiration Syndrome\t1\t1.3147291510963324\nCough\tBronchopulmonary Dysplasia\t2\t2.6294583021926647\nCough\tPneumonia\t95\t124.89926935415157\nCough\tPleuropneumonia\t1\t1.3147291510963324\nCough\tPneumonia, Aspiration\t35\t46.01552028837163\nCough\tPneumonia, Lipid\t5\t6.573645755481662\nCough\tPulmonary Alveolar Proteinosis\t7\t9.203104057674327\nCough\tPulmonary Atelectasis\t20\t26.29458302192665\nCough\tMiddle Lobe Syndrome\t5\t6.573645755481662\nCough\tPulmonary Edema\t21\t27.60931217302298\nCough\tPulmonary Embolism\t22\t28.92404132411931\nCough\tPulmonary Emphysema\t31\t40.756603683986306\nCough\tLung, Hyperlucent\t1\t1.3147291510963324\nCough\tPulmonary Eosinophilia\t30\t39.44187453288997\nCough\tPulmonary Fibrosis\t27\t35.49768707960097\nCough\tPulmonary Veno-Occlusive Disease\t1\t1.3147291510963324\nCough\tRespiratory Distress Syndrome, Adult\t8\t10.517833208770659\nCough\tRespiratory Distress Syndrome, Newborn\t6\t7.888374906577994\nCough\tScimitar Syndrome\t2\t2.6294583021926647\nCough\tNose Diseases\t6\t7.888374906577994\nCough\tEpistaxis\t2\t2.6294583021926647\nCough\tNasal Obstruction\t4\t5.2589166043853295\nCough\tNasal Polyps\t1\t1.3147291510963324\nCough\tParanasal Sinus Diseases\t3\t3.944187453288997\nCough\tSinusitis\t46\t60.47754095043129\nCough\tMaxillary Sinusitis\t2\t2.6294583021926647\nCough\tRhinitis\t54\t70.99537415920194\nCough\tRhinitis, Allergic, Perennial\t18\t23.66512471973398\nCough\tRhinitis, Allergic, Seasonal\t24\t31.553499626311975\nCough\tRhinitis, Atrophic\t1\t1.3147291510963324\nCough\tRhinitis, Vasomotor\t1\t1.3147291510963324\nCough\tPleural Diseases\t11\t14.462020662059656\nCough\tChylothorax\t1\t1.3147291510963324\nCough\tHydrothorax\t2\t2.6294583021926647\nCough\tPleural Effusion\t21\t27.60931217302298\nCough\tPleurisy\t9\t11.83256235986699\nCough\tPneumothorax\t23\t30.238770475215645\nCough\tRespiration Disorders\t72\t94.66049887893593\nCough\tAltitude Sickness\t5\t6.573645755481662\nCough\tApnea\t9\t11.83256235986699\nCough\tSleep Apnea Syndromes\t13\t17.09147896425232\nCough\tSleep Apnea, Central\t1\t1.3147291510963324\nCough\tSleep Apnea, Obstructive\t5\t6.573645755481662\nCough\tCough\t4598\t6045.124636740937\nCough\tDyspnea\t155\t203.78301841993152\nCough\tDyspnea, Paroxysmal\t2\t2.6294583021926647\nCough\tHyperventilation\t10\t13.147291510963324\nCough\tMouth Breathing\t2\t2.6294583021926647\nCough\tRespiratory Aspiration\t13\t17.09147896425232\nCough\tRespiratory Insufficiency\t60\t78.88374906577994\nCough\tAirway Obstruction\t70\t92.03104057674327\nCough\tHypoventilation\t2\t2.6294583021926647\nCough\tRespiratory Paralysis\t4\t5.2589166043853295\nCough\tRespiratory Hypersensitivity\t52\t68.36591585700928\nCough\tRespiratory System Abnormalities\t1\t1.3147291510963324\nCough\tBronchopulmonary Sequestration\t4\t5.2589166043853295\nCough\tRespiratory Tract Fistula\t3\t3.944187453288997\nCough\tEpiglottitis\t4\t5.2589166043853295\nCough\tTracheitis\t10\t13.147291510963324\nCough\tThoracic Diseases\t7\t9.203104057674327\nCough\tMediastinal Diseases\t8\t10.517833208770659\nCough\tMediastinal Emphysema\t20\t26.29458302192665\nCough\tMediastinitis\t1\t1.3147291510963324\nCough\tTracheal Diseases\t52\t68.36591585700928\nCough\tTracheal Stenosis\t14\t18.406208115348655\nCough\tEar Diseases\t1\t1.3147291510963324\nCough\tEarache\t2\t2.6294583021926647\nCough\tHearing Loss, Bilateral\t1\t1.3147291510963324\nCough\tHearing Loss, Functional\t1\t1.3147291510963324\nCough\tLabyrinth Diseases\t1\t1.3147291510963324\nCough\tVertigo\t1\t1.3147291510963324\nCough\tOtitis\t1\t1.3147291510963324\nCough\tOtitis Externa\t1\t1.3147291510963324\nCough\tOtitis Media\t5\t6.573645755481662\nCough\tOtitis Media with Effusion\t1\t1.3147291510963324\nCough\tMultiple Sclerosis\t6\t7.888374906577994\nCough\tMyasthenia Gravis\t1\t1.3147291510963324\nCough\tGuillain-Barre Syndrome\t2\t2.6294583021926647\nCough\tHereditary Sensory and Autonomic Neuropathies\t3\t3.944187453288997\nCough\tGiant Cell Arteritis\t26\t34.18295792850464\nCough\tAutonomic Nervous System Diseases\t4\t5.2589166043853295\nCough\tAdie Syndrome\t4\t5.2589166043853295\nCough\tHypotension, Orthostatic\t1\t1.3147291510963324\nCough\tSyncope, Vasovagal\t2\t2.6294583021926647\nCough\tCentral Nervous System Diseases\t1\t1.3147291510963324\nCough\tBrain Diseases\t3\t3.944187453288997\nCough\tParkinson Disease\t11\t14.462020662059656\nCough\tParkinson Disease, Postencephalitic\t1\t1.3147291510963324\nCough\tSupranuclear Palsy, Progressive\t1\t1.3147291510963324\nCough\tTourette Syndrome\t4\t5.2589166043853295\nCough\tCerebral Palsy\t4\t5.2589166043853295\nCough\tBrain Death\t1\t1.3147291510963324\nCough\tBrain Diseases, Metabolic, Inborn\t1\t1.3147291510963324\nCough\tGlycogen Storage Disease Type II\t2\t2.6294583021926647\nCough\tNiemann-Pick Disease, Type B\t1\t1.3147291510963324\nCough\tBrain Edema\t1\t1.3147291510963324\nCough\tBrain Injuries\t2\t2.6294583021926647\nCough\tPneumocephalus\t3\t3.944187453288997\nCough\tCerebellar Diseases\t1\t1.3147291510963324\nCough\tCerebellar Ataxia\t1\t1.3147291510963324\nCough\tAtaxia Telangiectasia\t1\t1.3147291510963324\nCough\tCerebrovascular Disorders\t7\t9.203104057674327\nCough\tBrain Ischemia\t3\t3.944187453288997\nCough\tBrain Infarction\t1\t1.3147291510963324\nCough\tBrain Stem Infarctions\t1\t1.3147291510963324\nCough\tLateral Medullary Syndrome\t1\t1.3147291510963324\nCough\tCerebral Infarction\t18\t23.66512471973398\nCough\tInfarction, Middle Cerebral Artery\t1\t1.3147291510963324\nCough\tIschemic Attack, Transient\t1\t1.3147291510963324\nCough\tCarotid Artery Diseases\t4\t5.2589166043853295\nCough\tCarotid Artery Thrombosis\t1\t1.3147291510963324\nCough\tCarotid Stenosis\t1\t1.3147291510963324\nCough\tVertebral Artery Dissection\t1\t1.3147291510963324\nCough\tIntracranial Aneurysm\t2\t2.6294583021926647\nCough\tIntracranial Arteriosclerosis\t1\t1.3147291510963324\nCough\tIntracranial Arteriovenous Malformations\t1\t1.3147291510963324\nCough\tIntracranial Embolism and Thrombosis\t2\t2.6294583021926647\nCough\tIntracranial Embolism\t3\t3.944187453288997\nCough\tCerebral Hemorrhage\t4\t5.2589166043853295\nCough\tHematoma, Epidural, Cranial\t2\t2.6294583021926647\nCough\tHematoma, Subdural\t2\t2.6294583021926647\nCough\tSubarachnoid Hemorrhage\t2\t2.6294583021926647\nCough\tStroke\t15\t19.720937266444984\nCough\tVascular Headaches\t1\t1.3147291510963324\nCough\tDementia\t1\t1.3147291510963324\nCough\tCreutzfeldt-Jakob Syndrome\t2\t2.6294583021926647\nCough\tMeningoencephalitis\t2\t2.6294583021926647\nCough\tEpilepsy\t11\t14.462020662059656\nCough\tEpilepsies, Partial\t3\t3.944187453288997\nCough\tEpilepsy, Temporal Lobe\t3\t3.944187453288997\nCough\tSeizures\t10\t13.147291510963324\nCough\tHeadache Disorders\t1\t1.3147291510963324\nCough\tHeadache Disorders, Primary\t2\t2.6294583021926647\nCough\tMigraine Disorders\t4\t5.2589166043853295\nCough\tMigraine without Aura\t1\t1.3147291510963324\nCough\tTension-Type Headache\t1\t1.3147291510963324\nCough\tCluster Headache\t2\t2.6294583021926647\nCough\tParoxysmal Hemicrania\t1\t1.3147291510963324\nCough\tHydrocephalus\t4\t5.2589166043853295\nCough\tHypoxia, Brain\t2\t2.6294583021926647\nCough\tIntracranial Hypertension\t1\t1.3147291510963324\nCough\tHypertensive Encephalopathy\t1\t1.3147291510963324\nCough\tPseudotumor Cerebri\t2\t2.6294583021926647\nCough\tIntracranial Hypotension\t2\t2.6294583021926647\nCough\tSubdural Effusion\t1\t1.3147291510963324\nCough\tMovement Disorders\t2\t2.6294583021926647\nCough\tDyskinesias\t1\t1.3147291510963324\nCough\tTorticollis\t2\t2.6294583021926647\nCough\tEssential Tremor\t1\t1.3147291510963324\nCough\tTic Disorders\t8\t10.517833208770659\nCough\tSpinal Cord Diseases\t2\t2.6294583021926647\nCough\tAmyotrophic Lateral Sclerosis\t18\t23.66512471973398\nCough\tMuscular Atrophy, Spinal\t1\t1.3147291510963324\nCough\tSpinal Muscular Atrophies of Childhood\t3\t3.944187453288997\nCough\tSpinal Cord Injuries\t18\t23.66512471973398\nCough\tSyringomyelia\t5\t6.573645755481662\nCough\tCranial Nerve Diseases\t2\t2.6294583021926647\nCough\tHypoglossal Nerve Diseases\t1\t1.3147291510963324\nCough\tNystagmus, Pathologic\t2\t2.6294583021926647\nCough\tOptic Nerve Diseases\t2\t2.6294583021926647\nCough\tOptic Neuritis\t1\t1.3147291510963324\nCough\tTrigeminal Neuralgia\t1\t1.3147291510963324\nCough\tVagus Nerve Diseases\t6\t7.888374906577994\nCough\tHereditary Sensory and Motor Neuropathy\t3\t3.944187453288997\nCough\tArnold-Chiari Malformation\t14\t18.406208115348655\nCough\tMeningocele\t1\t1.3147291510963324\nCough\tMotor Neuron Disease\t3\t3.944187453288997\nCough\tBulbar Palsy, Progressive\t2\t2.6294583021926647\nCough\tDecerebrate State\t8\t10.517833208770659\nCough\tDystonia\t1\t1.3147291510963324\nCough\tMyoclonus\t1\t1.3147291510963324\nCough\tPsychomotor Agitation\t1\t1.3147291510963324\nCough\tTics\t1\t1.3147291510963324\nCough\tLanguage Disorders\t1\t1.3147291510963324\nCough\tSpeech Disorders\t1\t1.3147291510963324\nCough\tMutism\t1\t1.3147291510963324\nCough\tConfusion\t2\t2.6294583021926647\nCough\tDelirium\t1\t1.3147291510963324\nCough\tConsciousness Disorders\t6\t7.888374906577994\nCough\tUnconsciousness\t2\t2.6294583021926647\nCough\tComa\t3\t3.944187453288997\nCough\tSyncope\t110\t144.62020662059655\nCough\tMemory Disorders\t1\t1.3147291510963324\nCough\tAmnesia\t1\t1.3147291510963324\nCough\tMental Retardation\t1\t1.3147291510963324\nCough\tDown Syndrome\t3\t3.944187453288997\nCough\tHallucinations\t2\t2.6294583021926647\nCough\tNeurogenic Inflammation\t1\t1.3147291510963324\nCough\tMuscular Atrophy\t1\t1.3147291510963324\nCough\tSpasm\t1\t1.3147291510963324\nCough\tPain\t30\t39.44187453288997\nCough\tBack Pain\t4\t5.2589166043853295\nCough\tHeadache\t43\t56.53335349714229\nCough\tNeck Pain\t1\t1.3147291510963324\nCough\tSciatica\t1\t1.3147291510963324\nCough\tParalysis\t2\t2.6294583021926647\nCough\tHemiplegia\t2\t2.6294583021926647\nCough\tParaplegia\t4\t5.2589166043853295\nCough\tQuadriplegia\t14\t18.406208115348655\nCough\tTonic Pupil\t2\t2.6294583021926647\nCough\tSensation Disorders\t1\t1.3147291510963324\nCough\tDizziness\t3\t3.944187453288997\nCough\tOlfaction Disorders\t1\t1.3147291510963324\nCough\tParesthesia\t1\t1.3147291510963324\nCough\tDysgeusia\t1\t1.3147291510963324\nCough\tVision Disorders\t1\t1.3147291510963324\nCough\tBlindness\t4\t5.2589166043853295\nCough\tNeuromuscular Diseases\t36\t47.33024943946796\nCough\tPeripheral Nervous System Diseases\t4\t5.2589166043853295\nCough\tDiabetic Neuropathies\t7\t9.203104057674327\nCough\tMononeuropathies\t1\t1.3147291510963324\nCough\tNerve Compression Syndromes\t4\t5.2589166043853295\nCough\tThoracic Outlet Syndrome\t1\t1.3147291510963324\nCough\tNeuritis\t1\t1.3147291510963324\nCough\tPOEMS Syndrome\t1\t1.3147291510963324\nCough\tNeurotoxicity Syndromes\t1\t1.3147291510963324\nCough\tArsenic Poisoning\t2\t2.6294583021926647\nCough\tSleep Disorders\t7\t9.203104057674327\nCough\tSleep Initiation and Maintenance Disorders\t4\t5.2589166043853295\nCough\tCraniocerebral Trauma\t4\t5.2589166043853295\nCough\tShaken Baby Syndrome\t1\t1.3147291510963324\nCough\tSkull Fractures\t1\t1.3147291510963324\nCough\tConjunctival Diseases\t1\t1.3147291510963324\nCough\tConjunctivitis\t4\t5.2589166043853295\nCough\tConjunctivitis, Allergic\t1\t1.3147291510963324\nCough\tKeratitis\t1\t1.3147291510963324\nCough\tChoroid Hemorrhage\t1\t1.3147291510963324\nCough\tRetinal Hemorrhage\t3\t3.944187453288997\nCough\tEyelid Diseases\t1\t1.3147291510963324\nCough\tBlepharoptosis\t1\t1.3147291510963324\nCough\tLacrimal Apparatus Diseases\t2\t2.6294583021926647\nCough\tGlaucoma\t3\t3.944187453288997\nCough\tGlaucoma, Open-Angle\t1\t1.3147291510963324\nCough\tOcular Hypotension\t1\t1.3147291510963324\nCough\tOrbital Diseases\t3\t3.944187453288997\nCough\tExophthalmos\t2\t2.6294583021926647\nCough\tMyopia\t1\t1.3147291510963324\nCough\tDiabetic Retinopathy\t1\t1.3147291510963324\nCough\tIris Diseases\t1\t1.3147291510963324\nCough\tGenital Diseases, Male\t1\t1.3147291510963324\nCough\tHemospermia\t1\t1.3147291510963324\nCough\tProstatic Hyperplasia\t2\t2.6294583021926647\nCough\tUrologic Diseases\t1\t1.3147291510963324\nCough\tKidney Diseases\t2\t2.6294583021926647\nCough\tDiabetes Insipidus\t1\t1.3147291510963324\nCough\tDiabetes Insipidus, Neurogenic\t1\t1.3147291510963324\nCough\tDiabetic Nephropathies\t1\t1.3147291510963324\nCough\tGlomerulonephritis\t2\t2.6294583021926647\nCough\tGlomerulonephritis, Membranoproliferative\t1\t1.3147291510963324\nCough\tNephrotic Syndrome\t2\t2.6294583021926647\nCough\tRenal Artery Obstruction\t1\t1.3147291510963324\nCough\tRenal Insufficiency\t1\t1.3147291510963324\nCough\tAcute Kidney Injury\t4\t5.2589166043853295\nCough\tKidney Failure, Chronic\t6\t7.888374906577994\nCough\tUrethral Diseases\t1\t1.3147291510963324\nCough\tUrinary Bladder Neck Obstruction\t1\t1.3147291510963324\nCough\tUrinary Bladder, Overactive\t2\t2.6294583021926647\nCough\tUrination Disorders\t6\t7.888374906577994\nCough\tHematuria\t1\t1.3147291510963324\nCough\tOliguria\t1\t1.3147291510963324\nCough\tAlbuminuria\t2\t2.6294583021926647\nCough\tUrinary Incontinence\t28\t36.81241623069731\nCough\tUrinary Incontinence, Stress\t99\t130.1581859585369\nCough\tUrinary Incontinence, Urge\t1\t1.3147291510963324\nCough\tFemale Urogenital Diseases\t1\t1.3147291510963324\nCough\tFallopian Tube Diseases\t1\t1.3147291510963324\nCough\tAnovulation\t1\t1.3147291510963324\nCough\tOvarian Hyperstimulation Syndrome\t1\t1.3147291510963324\nCough\tEndometriosis\t4\t5.2589166043853295\nCough\tInfertility, Female\t1\t1.3147291510963324\nCough\tUterine Cervical Incompetence\t1\t1.3147291510963324\nCough\tUterine Prolapse\t4\t5.2589166043853295\nCough\tVaginal Diseases\t2\t2.6294583021926647\nCough\tPregnancy Complications\t5\t6.573645755481662\nCough\tAbruptio Placentae\t1\t1.3147291510963324\nCough\tFetal Membranes, Premature Rupture\t1\t1.3147291510963324\nCough\tPregnancy Complications, Cardiovascular\t1\t1.3147291510963324\nCough\tPregnancy in Diabetics\t1\t1.3147291510963324\nCough\tPuerperal Disorders\t3\t3.944187453288997\nCough\tCardiovascular Abnormalities\t2\t2.6294583021926647\nCough\tHeart Defects, Congenital\t1\t1.3147291510963324\nCough\tCoronary Vessel Anomalies\t1\t1.3147291510963324\nCough\tHeart Septal Defects\t1\t1.3147291510963324\nCough\tHeart Septal Defects, Atrial\t11\t14.462020662059656\nCough\tHeart Septal Defects, Ventricular\t1\t1.3147291510963324\nCough\tTetralogy of Fallot\t1\t1.3147291510963324\nCough\tTransposition of Great Vessels\t1\t1.3147291510963324\nCough\tVascular Malformations\t1\t1.3147291510963324\nCough\tArteriovenous Malformations\t2\t2.6294583021926647\nCough\tVascular Fistula\t1\t1.3147291510963324\nCough\tArterio-Arterial Fistula\t1\t1.3147291510963324\nCough\tHeart Diseases\t11\t14.462020662059656\nCough\tArrhythmias, Cardiac\t15\t19.720937266444984\nCough\tSick Sinus Syndrome\t1\t1.3147291510963324\nCough\tAtrial Fibrillation\t3\t3.944187453288997\nCough\tBradycardia\t1\t1.3147291510963324\nCough\tAtrial Premature Complexes\t3\t3.944187453288997\nCough\tVentricular Premature Complexes\t4\t5.2589166043853295\nCough\tHeart Block\t8\t10.517833208770659\nCough\tAtrioventricular Block\t3\t3.944187453288997\nCough\tLong QT Syndrome\t2\t2.6294583021926647\nCough\tTachycardia\t8\t10.517833208770659\nCough\tTachycardia, Paroxysmal\t1\t1.3147291510963324\nCough\tTachycardia, Supraventricular\t2\t2.6294583021926647\nCough\tTachycardia, Ectopic Atrial\t1\t1.3147291510963324\nCough\tTachycardia, Ventricular\t2\t2.6294583021926647\nCough\tTorsades de Pointes\t1\t1.3147291510963324\nCough\tVentricular Fibrillation\t11\t14.462020662059656\nCough\tCardiac Output, Low\t3\t3.944187453288997\nCough\tCardiac Tamponade\t1\t1.3147291510963324\nCough\tCardiomegaly\t1\t1.3147291510963324\nCough\tHypertrophy, Left Ventricular\t2\t2.6294583021926647\nCough\tHypertrophy, Right Ventricular\t1\t1.3147291510963324\nCough\tCardiomyopathies\t4\t5.2589166043853295\nCough\tCardiomyopathy, Hypertrophic\t2\t2.6294583021926647\nCough\tCardiomyopathy, Restrictive\t1\t1.3147291510963324\nCough\tMyocardial Reperfusion Injury\t1\t1.3147291510963324\nCough\tMyocarditis\t4\t5.2589166043853295\nCough\tHeart Arrest\t11\t14.462020662059656\nCough\tHeart Failure\t31\t40.756603683986306\nCough\tAortic Valve Insufficiency\t2\t2.6294583021926647\nCough\tMitral Valve Prolapse\t1\t1.3147291510963324\nCough\tMitral Valve Insufficiency\t1\t1.3147291510963324\nCough\tMitral Valve Stenosis\t4\t5.2589166043853295\nCough\tTricuspid Valve Stenosis\t1\t1.3147291510963324\nCough\tMyocardial Ischemia\t2\t2.6294583021926647\nCough\tAngina Pectoris\t2\t2.6294583021926647\nCough\tAngina, Unstable\t1\t1.3147291510963324\nCough\tCoronary Disease\t7\t9.203104057674327\nCough\tCoronary Artery Disease\t7\t9.203104057674327\nCough\tMyocardial Infarction\t13\t17.09147896425232\nCough\tShock, Cardiogenic\t2\t2.6294583021926647\nCough\tPericardial Effusion\t3\t3.944187453288997\nCough\tPericarditis\t6\t7.888374906577994\nCough\tPericarditis, Constrictive\t3\t3.944187453288997\nCough\tPneumopericardium\t3\t3.944187453288997\nCough\tPulmonary Heart Disease\t6\t7.888374906577994\nCough\tVentricular Dysfunction, Left\t5\t6.573645755481662\nCough\tTakotsubo Cardiomyopathy\t1\t1.3147291510963324\nCough\tVentricular Outflow Obstruction\t1\t1.3147291510963324\nCough\tVascular Diseases\t2\t2.6294583021926647\nCough\tAneurysm\t5\t6.573645755481662\nCough\tAneurysm, Dissecting\t4\t5.2589166043853295\nCough\tAneurysm, False\t5\t6.573645755481662\nCough\tAneurysm, Ruptured\t2\t2.6294583021926647\nCough\tAortic Rupture\t3\t3.944187453288997\nCough\tAortic Aneurysm\t3\t3.944187453288997\nCough\tAortic Aneurysm, Thoracic\t9\t11.83256235986699\nCough\tAngioedema\t9\t11.83256235986699\nCough\tAortic Diseases\t1\t1.3147291510963324\nCough\tAortitis\t2\t2.6294583021926647\nCough\tArterial Occlusive Diseases\t4\t5.2589166043853295\nCough\tArteriosclerosis\t1\t1.3147291510963324\nCough\tArteritis\t2\t2.6294583021926647\nCough\tDiabetic Angiopathies\t1\t1.3147291510963324\nCough\tDiabetic Foot\t1\t1.3147291510963324\nCough\tEmbolism\t3\t3.944187453288997\nCough\tEmbolism, Air\t13\t17.09147896425232\nCough\tEmbolism, Fat\t1\t1.3147291510963324\nCough\tEmbolism, Paradoxical\t2\t2.6294583021926647\nCough\tVenous Thromboembolism\t1\t1.3147291510963324\nCough\tThrombosis\t3\t3.944187453288997\nCough\tVenous Thrombosis\t1\t1.3147291510963324\nCough\tThrombophlebitis\t3\t3.944187453288997\nCough\tEhlers-Danlos Syndrome\t2\t2.6294583021926647\nCough\tHypertension\t93\t122.26981105195891\nCough\tHypotension\t7\t9.203104057674327\nCough\tSuperior Vena Cava Syndrome\t4\t5.2589166043853295\nCough\tVaricose Veins\t3\t3.944187453288997\nCough\tVasculitis\t3\t3.944187453288997\nCough\tMucocutaneous Lymph Node Syndrome\t7\t9.203104057674327\nCough\tPurpura, Schoenlein-Henoch\t1\t1.3147291510963324\nCough\tChurg-Strauss Syndrome\t3\t3.944187453288997\nCough\tVasculitis, Leukocytoclastic, Cutaneous\t2\t2.6294583021926647\nCough\tVenous Insufficiency\t2\t2.6294583021926647\nCough\tHematologic Diseases\t1\t1.3147291510963324\nCough\tAnemia\t5\t6.573645755481662\nCough\tAnemia, Aplastic\t1\t1.3147291510963324\nCough\tAnemia, Sickle Cell\t13\t17.09147896425232\nCough\tSickle Cell Trait\t1\t1.3147291510963324\nCough\tbeta-Thalassemia\t2\t2.6294583021926647\nCough\tAnemia, Pernicious\t1\t1.3147291510963324\nCough\tAnemia, Refractory\t1\t1.3147291510963324\nCough\tBlood Coagulation Disorders\t1\t1.3147291510963324\nCough\tHemophilia A\t1\t1.3147291510963324\nCough\tWiskott-Aldrich Syndrome\t1\t1.3147291510963324\nCough\tEcchymosis\t2\t2.6294583021926647\nCough\tPurpura\t3\t3.944187453288997\nCough\tThrombocytopenia\t1\t1.3147291510963324\nCough\tAgammaglobulinemia\t2\t2.6294583021926647\nCough\tIgG Deficiency\t1\t1.3147291510963324\nCough\tMyelodysplastic Syndromes\t1\t1.3147291510963324\nCough\tPolycythemia Vera\t3\t3.944187453288997\nCough\tEosinophilia\t48\t63.10699925262395\nCough\tAngiolymphoid Hyperplasia with Eosinophilia\t2\t2.6294583021926647\nCough\tHypereosinophilic Syndrome\t6\t7.888374906577994\nCough\tLeukocytosis\t3\t3.944187453288997\nCough\tLymphocytosis\t2\t2.6294583021926647\nCough\tChediak-Higashi Syndrome\t1\t1.3147291510963324\nCough\tGranulomatous Disease, Chronic\t2\t2.6294583021926647\nCough\tJobs Syndrome 0.0000000000
## Mandibular Diseases 0.0049299949
## Tuberculosis
## Lupus Nephritis 0.039688980
## Uterine Cervical Diseases 0.002267452
## Tuberculosis 1.000000000
## Silo Fillers Disease\t1\t1.3147291510963324\nCough\tAnti-Glomerular Basement Membrane Disease\t3\t3.944187453288997\nCough\tHistiocytosis, Langerhans-Cell\t10\t13.147291510963324\nCough\tIdiopathic Pulmonary Fibrosis\t29\t38.12714538179364\nCough\tPneumoconiosis\t19\t24.979853870830315\nCough\tAsbestosis\t9\t11.83256235986699\nCough\tByssinosis\t4\t5.2589166043853295\nCough\tSilicosis\t8\t10.517833208770659\nCough\tSarcoidosis, Pulmonary\t20\t26.29458302192665\nCough\tWegener Granulomatosis\t9\t11.83256235986699\nCough\tLung Diseases, Obstructive\t93\t122.26981105195891\nCough\tPulmonary Disease, Chronic Obstructive\t90\t118.3256235986699\nCough\tLung Injury\t1\t1.3147291510963324\nCough\tMeconium Aspiration Syndrome\t1\t1.3147291510963324\nCough\tBronchopulmonary Dysplasia\t2\t2.6294583021926647\nCough\tPneumonia\t95\t124.89926935415157\nCough\tPleuropneumonia\t1\t1.3147291510963324\nCough\tPneumonia, Aspiration\t35\t46.01552028837163\nCough\tPneumonia, Lipid\t5\t6.573645755481662\nCough\tPulmonary Alveolar Proteinosis\t7\t9.203104057674327\nCough\tPulmonary Atelectasis\t20\t26.29458302192665\nCough\tMiddle Lobe Syndrome\t5\t6.573645755481662\nCough\tPulmonary Edema\t21\t27.60931217302298\nCough\tPulmonary Embolism\t22\t28.92404132411931\nCough\tPulmonary Emphysema\t31\t40.756603683986306\nCough\tLung, Hyperlucent\t1\t1.3147291510963324\nCough\tPulmonary Eosinophilia\t30\t39.44187453288997\nCough\tPulmonary Fibrosis\t27\t35.49768707960097\nCough\tPulmonary Veno-Occlusive Disease\t1\t1.3147291510963324\nCough\tRespiratory Distress Syndrome, Adult\t8\t10.517833208770659\nCough\tRespiratory Distress Syndrome, Newborn\t6\t7.888374906577994\nCough\tScimitar Syndrome\t2\t2.6294583021926647\nCough\tNose Diseases\t6\t7.888374906577994\nCough\tEpistaxis\t2\t2.6294583021926647\nCough\tNasal Obstruction\t4\t5.2589166043853295\nCough\tNasal Polyps\t1\t1.3147291510963324\nCough\tParanasal Sinus Diseases\t3\t3.944187453288997\nCough\tSinusitis\t46\t60.47754095043129\nCough\tMaxillary Sinusitis\t2\t2.6294583021926647\nCough\tRhinitis\t54\t70.99537415920194\nCough\tRhinitis, Allergic, Perennial\t18\t23.66512471973398\nCough\tRhinitis, Allergic, Seasonal\t24\t31.553499626311975\nCough\tRhinitis, Atrophic\t1\t1.3147291510963324\nCough\tRhinitis, Vasomotor\t1\t1.3147291510963324\nCough\tPleural Diseases\t11\t14.462020662059656\nCough\tChylothorax\t1\t1.3147291510963324\nCough\tHydrothorax\t2\t2.6294583021926647\nCough\tPleural Effusion\t21\t27.60931217302298\nCough\tPleurisy\t9\t11.83256235986699\nCough\tPneumothorax\t23\t30.238770475215645\nCough\tRespiration Disorders\t72\t94.66049887893593\nCough\tAltitude Sickness\t5\t6.573645755481662\nCough\tApnea\t9\t11.83256235986699\nCough\tSleep Apnea Syndromes\t13\t17.09147896425232\nCough\tSleep Apnea, Central\t1\t1.3147291510963324\nCough\tSleep Apnea, Obstructive\t5\t6.573645755481662\nCough\tCough\t4598\t6045.124636740937\nCough\tDyspnea\t155\t203.78301841993152\nCough\tDyspnea, Paroxysmal\t2\t2.6294583021926647\nCough\tHyperventilation\t10\t13.147291510963324\nCough\tMouth Breathing\t2\t2.6294583021926647\nCough\tRespiratory Aspiration\t13\t17.09147896425232\nCough\tRespiratory Insufficiency\t60\t78.88374906577994\nCough\tAirway Obstruction\t70\t92.03104057674327\nCough\tHypoventilation\t2\t2.6294583021926647\nCough\tRespiratory Paralysis\t4\t5.2589166043853295\nCough\tRespiratory Hypersensitivity\t52\t68.36591585700928\nCough\tRespiratory System Abnormalities\t1\t1.3147291510963324\nCough\tBronchopulmonary Sequestration\t4\t5.2589166043853295\nCough\tRespiratory Tract Fistula\t3\t3.944187453288997\nCough\tEpiglottitis\t4\t5.2589166043853295\nCough\tTracheitis\t10\t13.147291510963324\nCough\tThoracic Diseases\t7\t9.203104057674327\nCough\tMediastinal Diseases\t8\t10.517833208770659\nCough\tMediastinal Emphysema\t20\t26.29458302192665\nCough\tMediastinitis\t1\t1.3147291510963324\nCough\tTracheal Diseases\t52\t68.36591585700928\nCough\tTracheal Stenosis\t14\t18.406208115348655\nCough\tEar Diseases\t1\t1.3147291510963324\nCough\tEarache\t2\t2.6294583021926647\nCough\tHearing Loss, Bilateral\t1\t1.3147291510963324\nCough\tHearing Loss, Functional\t1\t1.3147291510963324\nCough\tLabyrinth Diseases\t1\t1.3147291510963324\nCough\tVertigo\t1\t1.3147291510963324\nCough\tOtitis\t1\t1.3147291510963324\nCough\tOtitis Externa\t1\t1.3147291510963324\nCough\tOtitis Media\t5\t6.573645755481662\nCough\tOtitis Media with Effusion\t1\t1.3147291510963324\nCough\tMultiple Sclerosis\t6\t7.888374906577994\nCough\tMyasthenia Gravis\t1\t1.3147291510963324\nCough\tGuillain-Barre Syndrome\t2\t2.6294583021926647\nCough\tHereditary Sensory and Autonomic Neuropathies\t3\t3.944187453288997\nCough\tGiant Cell Arteritis\t26\t34.18295792850464\nCough\tAutonomic Nervous System Diseases\t4\t5.2589166043853295\nCough\tAdie Syndrome\t4\t5.2589166043853295\nCough\tHypotension, Orthostatic\t1\t1.3147291510963324\nCough\tSyncope, Vasovagal\t2\t2.6294583021926647\nCough\tCentral Nervous System Diseases\t1\t1.3147291510963324\nCough\tBrain Diseases\t3\t3.944187453288997\nCough\tParkinson Disease\t11\t14.462020662059656\nCough\tParkinson Disease, Postencephalitic\t1\t1.3147291510963324\nCough\tSupranuclear Palsy, Progressive\t1\t1.3147291510963324\nCough\tTourette Syndrome\t4\t5.2589166043853295\nCough\tCerebral Palsy\t4\t5.2589166043853295\nCough\tBrain Death\t1\t1.3147291510963324\nCough\tBrain Diseases, Metabolic, Inborn\t1\t1.3147291510963324\nCough\tGlycogen Storage Disease Type II\t2\t2.6294583021926647\nCough\tNiemann-Pick Disease, Type B\t1\t1.3147291510963324\nCough\tBrain Edema\t1\t1.3147291510963324\nCough\tBrain Injuries\t2\t2.6294583021926647\nCough\tPneumocephalus\t3\t3.944187453288997\nCough\tCerebellar Diseases\t1\t1.3147291510963324\nCough\tCerebellar Ataxia\t1\t1.3147291510963324\nCough\tAtaxia Telangiectasia\t1\t1.3147291510963324\nCough\tCerebrovascular Disorders\t7\t9.203104057674327\nCough\tBrain Ischemia\t3\t3.944187453288997\nCough\tBrain Infarction\t1\t1.3147291510963324\nCough\tBrain Stem Infarctions\t1\t1.3147291510963324\nCough\tLateral Medullary Syndrome\t1\t1.3147291510963324\nCough\tCerebral Infarction\t18\t23.66512471973398\nCough\tInfarction, Middle Cerebral Artery\t1\t1.3147291510963324\nCough\tIschemic Attack, Transient\t1\t1.3147291510963324\nCough\tCarotid Artery Diseases\t4\t5.2589166043853295\nCough\tCarotid Artery Thrombosis\t1\t1.3147291510963324\nCough\tCarotid Stenosis\t1\t1.3147291510963324\nCough\tVertebral Artery Dissection\t1\t1.3147291510963324\nCough\tIntracranial Aneurysm\t2\t2.6294583021926647\nCough\tIntracranial Arteriosclerosis\t1\t1.3147291510963324\nCough\tIntracranial Arteriovenous Malformations\t1\t1.3147291510963324\nCough\tIntracranial Embolism and Thrombosis\t2\t2.6294583021926647\nCough\tIntracranial Embolism\t3\t3.944187453288997\nCough\tCerebral Hemorrhage\t4\t5.2589166043853295\nCough\tHematoma, Epidural, Cranial\t2\t2.6294583021926647\nCough\tHematoma, Subdural\t2\t2.6294583021926647\nCough\tSubarachnoid Hemorrhage\t2\t2.6294583021926647\nCough\tStroke\t15\t19.720937266444984\nCough\tVascular Headaches\t1\t1.3147291510963324\nCough\tDementia\t1\t1.3147291510963324\nCough\tCreutzfeldt-Jakob Syndrome\t2\t2.6294583021926647\nCough\tMeningoencephalitis\t2\t2.6294583021926647\nCough\tEpilepsy\t11\t14.462020662059656\nCough\tEpilepsies, Partial\t3\t3.944187453288997\nCough\tEpilepsy, Temporal Lobe\t3\t3.944187453288997\nCough\tSeizures\t10\t13.147291510963324\nCough\tHeadache Disorders\t1\t1.3147291510963324\nCough\tHeadache Disorders, Primary\t2\t2.6294583021926647\nCough\tMigraine Disorders\t4\t5.2589166043853295\nCough\tMigraine without Aura\t1\t1.3147291510963324\nCough\tTension-Type Headache\t1\t1.3147291510963324\nCough\tCluster Headache\t2\t2.6294583021926647\nCough\tParoxysmal Hemicrania\t1\t1.3147291510963324\nCough\tHydrocephalus\t4\t5.2589166043853295\nCough\tHypoxia, Brain\t2\t2.6294583021926647\nCough\tIntracranial Hypertension\t1\t1.3147291510963324\nCough\tHypertensive Encephalopathy\t1\t1.3147291510963324\nCough\tPseudotumor Cerebri\t2\t2.6294583021926647\nCough\tIntracranial Hypotension\t2\t2.6294583021926647\nCough\tSubdural Effusion\t1\t1.3147291510963324\nCough\tMovement Disorders\t2\t2.6294583021926647\nCough\tDyskinesias\t1\t1.3147291510963324\nCough\tTorticollis\t2\t2.6294583021926647\nCough\tEssential Tremor\t1\t1.3147291510963324\nCough\tTic Disorders\t8\t10.517833208770659\nCough\tSpinal Cord Diseases\t2\t2.6294583021926647\nCough\tAmyotrophic Lateral Sclerosis\t18\t23.66512471973398\nCough\tMuscular Atrophy, Spinal\t1\t1.3147291510963324\nCough\tSpinal Muscular Atrophies of Childhood\t3\t3.944187453288997\nCough\tSpinal Cord Injuries\t18\t23.66512471973398\nCough\tSyringomyelia\t5\t6.573645755481662\nCough\tCranial Nerve Diseases\t2\t2.6294583021926647\nCough\tHypoglossal Nerve Diseases\t1\t1.3147291510963324\nCough\tNystagmus, Pathologic\t2\t2.6294583021926647\nCough\tOptic Nerve Diseases\t2\t2.6294583021926647\nCough\tOptic Neuritis\t1\t1.3147291510963324\nCough\tTrigeminal Neuralgia\t1\t1.3147291510963324\nCough\tVagus Nerve Diseases\t6\t7.888374906577994\nCough\tHereditary Sensory and Motor Neuropathy\t3\t3.944187453288997\nCough\tArnold-Chiari Malformation\t14\t18.406208115348655\nCough\tMeningocele\t1\t1.3147291510963324\nCough\tMotor Neuron Disease\t3\t3.944187453288997\nCough\tBulbar Palsy, Progressive\t2\t2.6294583021926647\nCough\tDecerebrate State\t8\t10.517833208770659\nCough\tDystonia\t1\t1.3147291510963324\nCough\tMyoclonus\t1\t1.3147291510963324\nCough\tPsychomotor Agitation\t1\t1.3147291510963324\nCough\tTics\t1\t1.3147291510963324\nCough\tLanguage Disorders\t1\t1.3147291510963324\nCough\tSpeech Disorders\t1\t1.3147291510963324\nCough\tMutism\t1\t1.3147291510963324\nCough\tConfusion\t2\t2.6294583021926647\nCough\tDelirium\t1\t1.3147291510963324\nCough\tConsciousness Disorders\t6\t7.888374906577994\nCough\tUnconsciousness\t2\t2.6294583021926647\nCough\tComa\t3\t3.944187453288997\nCough\tSyncope\t110\t144.62020662059655\nCough\tMemory Disorders\t1\t1.3147291510963324\nCough\tAmnesia\t1\t1.3147291510963324\nCough\tMental Retardation\t1\t1.3147291510963324\nCough\tDown Syndrome\t3\t3.944187453288997\nCough\tHallucinations\t2\t2.6294583021926647\nCough\tNeurogenic Inflammation\t1\t1.3147291510963324\nCough\tMuscular Atrophy\t1\t1.3147291510963324\nCough\tSpasm\t1\t1.3147291510963324\nCough\tPain\t30\t39.44187453288997\nCough\tBack Pain\t4\t5.2589166043853295\nCough\tHeadache\t43\t56.53335349714229\nCough\tNeck Pain\t1\t1.3147291510963324\nCough\tSciatica\t1\t1.3147291510963324\nCough\tParalysis\t2\t2.6294583021926647\nCough\tHemiplegia\t2\t2.6294583021926647\nCough\tParaplegia\t4\t5.2589166043853295\nCough\tQuadriplegia\t14\t18.406208115348655\nCough\tTonic Pupil\t2\t2.6294583021926647\nCough\tSensation Disorders\t1\t1.3147291510963324\nCough\tDizziness\t3\t3.944187453288997\nCough\tOlfaction Disorders\t1\t1.3147291510963324\nCough\tParesthesia\t1\t1.3147291510963324\nCough\tDysgeusia\t1\t1.3147291510963324\nCough\tVision Disorders\t1\t1.3147291510963324\nCough\tBlindness\t4\t5.2589166043853295\nCough\tNeuromuscular Diseases\t36\t47.33024943946796\nCough\tPeripheral Nervous System Diseases\t4\t5.2589166043853295\nCough\tDiabetic Neuropathies\t7\t9.203104057674327\nCough\tMononeuropathies\t1\t1.3147291510963324\nCough\tNerve Compression Syndromes\t4\t5.2589166043853295\nCough\tThoracic Outlet Syndrome\t1\t1.3147291510963324\nCough\tNeuritis\t1\t1.3147291510963324\nCough\tPOEMS Syndrome\t1\t1.3147291510963324\nCough\tNeurotoxicity Syndromes\t1\t1.3147291510963324\nCough\tArsenic Poisoning\t2\t2.6294583021926647\nCough\tSleep Disorders\t7\t9.203104057674327\nCough\tSleep Initiation and Maintenance Disorders\t4\t5.2589166043853295\nCough\tCraniocerebral Trauma\t4\t5.2589166043853295\nCough\tShaken Baby Syndrome\t1\t1.3147291510963324\nCough\tSkull Fractures\t1\t1.3147291510963324\nCough\tConjunctival Diseases\t1\t1.3147291510963324\nCough\tConjunctivitis\t4\t5.2589166043853295\nCough\tConjunctivitis, Allergic\t1\t1.3147291510963324\nCough\tKeratitis\t1\t1.3147291510963324\nCough\tChoroid Hemorrhage\t1\t1.3147291510963324\nCough\tRetinal Hemorrhage\t3\t3.944187453288997\nCough\tEyelid Diseases\t1\t1.3147291510963324\nCough\tBlepharoptosis\t1\t1.3147291510963324\nCough\tLacrimal Apparatus Diseases\t2\t2.6294583021926647\nCough\tGlaucoma\t3\t3.944187453288997\nCough\tGlaucoma, Open-Angle\t1\t1.3147291510963324\nCough\tOcular Hypotension\t1\t1.3147291510963324\nCough\tOrbital Diseases\t3\t3.944187453288997\nCough\tExophthalmos\t2\t2.6294583021926647\nCough\tMyopia\t1\t1.3147291510963324\nCough\tDiabetic Retinopathy\t1\t1.3147291510963324\nCough\tIris Diseases\t1\t1.3147291510963324\nCough\tGenital Diseases, Male\t1\t1.3147291510963324\nCough\tHemospermia\t1\t1.3147291510963324\nCough\tProstatic Hyperplasia\t2\t2.6294583021926647\nCough\tUrologic Diseases\t1\t1.3147291510963324\nCough\tKidney Diseases\t2\t2.6294583021926647\nCough\tDiabetes Insipidus\t1\t1.3147291510963324\nCough\tDiabetes Insipidus, Neurogenic\t1\t1.3147291510963324\nCough\tDiabetic Nephropathies\t1\t1.3147291510963324\nCough\tGlomerulonephritis\t2\t2.6294583021926647\nCough\tGlomerulonephritis, Membranoproliferative\t1\t1.3147291510963324\nCough\tNephrotic Syndrome\t2\t2.6294583021926647\nCough\tRenal Artery Obstruction\t1\t1.3147291510963324\nCough\tRenal Insufficiency\t1\t1.3147291510963324\nCough\tAcute Kidney Injury\t4\t5.2589166043853295\nCough\tKidney Failure, Chronic\t6\t7.888374906577994\nCough\tUrethral Diseases\t1\t1.3147291510963324\nCough\tUrinary Bladder Neck Obstruction\t1\t1.3147291510963324\nCough\tUrinary Bladder, Overactive\t2\t2.6294583021926647\nCough\tUrination Disorders\t6\t7.888374906577994\nCough\tHematuria\t1\t1.3147291510963324\nCough\tOliguria\t1\t1.3147291510963324\nCough\tAlbuminuria\t2\t2.6294583021926647\nCough\tUrinary Incontinence\t28\t36.81241623069731\nCough\tUrinary Incontinence, Stress\t99\t130.1581859585369\nCough\tUrinary Incontinence, Urge\t1\t1.3147291510963324\nCough\tFemale Urogenital Diseases\t1\t1.3147291510963324\nCough\tFallopian Tube Diseases\t1\t1.3147291510963324\nCough\tAnovulation\t1\t1.3147291510963324\nCough\tOvarian Hyperstimulation Syndrome\t1\t1.3147291510963324\nCough\tEndometriosis\t4\t5.2589166043853295\nCough\tInfertility, Female\t1\t1.3147291510963324\nCough\tUterine Cervical Incompetence\t1\t1.3147291510963324\nCough\tUterine Prolapse\t4\t5.2589166043853295\nCough\tVaginal Diseases\t2\t2.6294583021926647\nCough\tPregnancy Complications\t5\t6.573645755481662\nCough\tAbruptio Placentae\t1\t1.3147291510963324\nCough\tFetal Membranes, Premature Rupture\t1\t1.3147291510963324\nCough\tPregnancy Complications, Cardiovascular\t1\t1.3147291510963324\nCough\tPregnancy in Diabetics\t1\t1.3147291510963324\nCough\tPuerperal Disorders\t3\t3.944187453288997\nCough\tCardiovascular Abnormalities\t2\t2.6294583021926647\nCough\tHeart Defects, Congenital\t1\t1.3147291510963324\nCough\tCoronary Vessel Anomalies\t1\t1.3147291510963324\nCough\tHeart Septal Defects\t1\t1.3147291510963324\nCough\tHeart Septal Defects, Atrial\t11\t14.462020662059656\nCough\tHeart Septal Defects, Ventricular\t1\t1.3147291510963324\nCough\tTetralogy of Fallot\t1\t1.3147291510963324\nCough\tTransposition of Great Vessels\t1\t1.3147291510963324\nCough\tVascular Malformations\t1\t1.3147291510963324\nCough\tArteriovenous Malformations\t2\t2.6294583021926647\nCough\tVascular Fistula\t1\t1.3147291510963324\nCough\tArterio-Arterial Fistula\t1\t1.3147291510963324\nCough\tHeart Diseases\t11\t14.462020662059656\nCough\tArrhythmias, Cardiac\t15\t19.720937266444984\nCough\tSick Sinus Syndrome\t1\t1.3147291510963324\nCough\tAtrial Fibrillation\t3\t3.944187453288997\nCough\tBradycardia\t1\t1.3147291510963324\nCough\tAtrial Premature Complexes\t3\t3.944187453288997\nCough\tVentricular Premature Complexes\t4\t5.2589166043853295\nCough\tHeart Block\t8\t10.517833208770659\nCough\tAtrioventricular Block\t3\t3.944187453288997\nCough\tLong QT Syndrome\t2\t2.6294583021926647\nCough\tTachycardia\t8\t10.517833208770659\nCough\tTachycardia, Paroxysmal\t1\t1.3147291510963324\nCough\tTachycardia, Supraventricular\t2\t2.6294583021926647\nCough\tTachycardia, Ectopic Atrial\t1\t1.3147291510963324\nCough\tTachycardia, Ventricular\t2\t2.6294583021926647\nCough\tTorsades de Pointes\t1\t1.3147291510963324\nCough\tVentricular Fibrillation\t11\t14.462020662059656\nCough\tCardiac Output, Low\t3\t3.944187453288997\nCough\tCardiac Tamponade\t1\t1.3147291510963324\nCough\tCardiomegaly\t1\t1.3147291510963324\nCough\tHypertrophy, Left Ventricular\t2\t2.6294583021926647\nCough\tHypertrophy, Right Ventricular\t1\t1.3147291510963324\nCough\tCardiomyopathies\t4\t5.2589166043853295\nCough\tCardiomyopathy, Hypertrophic\t2\t2.6294583021926647\nCough\tCardiomyopathy, Restrictive\t1\t1.3147291510963324\nCough\tMyocardial Reperfusion Injury\t1\t1.3147291510963324\nCough\tMyocarditis\t4\t5.2589166043853295\nCough\tHeart Arrest\t11\t14.462020662059656\nCough\tHeart Failure\t31\t40.756603683986306\nCough\tAortic Valve Insufficiency\t2\t2.6294583021926647\nCough\tMitral Valve Prolapse\t1\t1.3147291510963324\nCough\tMitral Valve Insufficiency\t1\t1.3147291510963324\nCough\tMitral Valve Stenosis\t4\t5.2589166043853295\nCough\tTricuspid Valve Stenosis\t1\t1.3147291510963324\nCough\tMyocardial Ischemia\t2\t2.6294583021926647\nCough\tAngina Pectoris\t2\t2.6294583021926647\nCough\tAngina, Unstable\t1\t1.3147291510963324\nCough\tCoronary Disease\t7\t9.203104057674327\nCough\tCoronary Artery Disease\t7\t9.203104057674327\nCough\tMyocardial Infarction\t13\t17.09147896425232\nCough\tShock, Cardiogenic\t2\t2.6294583021926647\nCough\tPericardial Effusion\t3\t3.944187453288997\nCough\tPericarditis\t6\t7.888374906577994\nCough\tPericarditis, Constrictive\t3\t3.944187453288997\nCough\tPneumopericardium\t3\t3.944187453288997\nCough\tPulmonary Heart Disease\t6\t7.888374906577994\nCough\tVentricular Dysfunction, Left\t5\t6.573645755481662\nCough\tTakotsubo Cardiomyopathy\t1\t1.3147291510963324\nCough\tVentricular Outflow Obstruction\t1\t1.3147291510963324\nCough\tVascular Diseases\t2\t2.6294583021926647\nCough\tAneurysm\t5\t6.573645755481662\nCough\tAneurysm, Dissecting\t4\t5.2589166043853295\nCough\tAneurysm, False\t5\t6.573645755481662\nCough\tAneurysm, Ruptured\t2\t2.6294583021926647\nCough\tAortic Rupture\t3\t3.944187453288997\nCough\tAortic Aneurysm\t3\t3.944187453288997\nCough\tAortic Aneurysm, Thoracic\t9\t11.83256235986699\nCough\tAngioedema\t9\t11.83256235986699\nCough\tAortic Diseases\t1\t1.3147291510963324\nCough\tAortitis\t2\t2.6294583021926647\nCough\tArterial Occlusive Diseases\t4\t5.2589166043853295\nCough\tArteriosclerosis\t1\t1.3147291510963324\nCough\tArteritis\t2\t2.6294583021926647\nCough\tDiabetic Angiopathies\t1\t1.3147291510963324\nCough\tDiabetic Foot\t1\t1.3147291510963324\nCough\tEmbolism\t3\t3.944187453288997\nCough\tEmbolism, Air\t13\t17.09147896425232\nCough\tEmbolism, Fat\t1\t1.3147291510963324\nCough\tEmbolism, Paradoxical\t2\t2.6294583021926647\nCough\tVenous Thromboembolism\t1\t1.3147291510963324\nCough\tThrombosis\t3\t3.944187453288997\nCough\tVenous Thrombosis\t1\t1.3147291510963324\nCough\tThrombophlebitis\t3\t3.944187453288997\nCough\tEhlers-Danlos Syndrome\t2\t2.6294583021926647\nCough\tHypertension\t93\t122.26981105195891\nCough\tHypotension\t7\t9.203104057674327\nCough\tSuperior Vena Cava Syndrome\t4\t5.2589166043853295\nCough\tVaricose Veins\t3\t3.944187453288997\nCough\tVasculitis\t3\t3.944187453288997\nCough\tMucocutaneous Lymph Node Syndrome\t7\t9.203104057674327\nCough\tPurpura, Schoenlein-Henoch\t1\t1.3147291510963324\nCough\tChurg-Strauss Syndrome\t3\t3.944187453288997\nCough\tVasculitis, Leukocytoclastic, Cutaneous\t2\t2.6294583021926647\nCough\tVenous Insufficiency\t2\t2.6294583021926647\nCough\tHematologic Diseases\t1\t1.3147291510963324\nCough\tAnemia\t5\t6.573645755481662\nCough\tAnemia, Aplastic\t1\t1.3147291510963324\nCough\tAnemia, Sickle Cell\t13\t17.09147896425232\nCough\tSickle Cell Trait\t1\t1.3147291510963324\nCough\tbeta-Thalassemia\t2\t2.6294583021926647\nCough\tAnemia, Pernicious\t1\t1.3147291510963324\nCough\tAnemia, Refractory\t1\t1.3147291510963324\nCough\tBlood Coagulation Disorders\t1\t1.3147291510963324\nCough\tHemophilia A\t1\t1.3147291510963324\nCough\tWiskott-Aldrich Syndrome\t1\t1.3147291510963324\nCough\tEcchymosis\t2\t2.6294583021926647\nCough\tPurpura\t3\t3.944187453288997\nCough\tThrombocytopenia\t1\t1.3147291510963324\nCough\tAgammaglobulinemia\t2\t2.6294583021926647\nCough\tIgG Deficiency\t1\t1.3147291510963324\nCough\tMyelodysplastic Syndromes\t1\t1.3147291510963324\nCough\tPolycythemia Vera\t3\t3.944187453288997\nCough\tEosinophilia\t48\t63.10699925262395\nCough\tAngiolymphoid Hyperplasia with Eosinophilia\t2\t2.6294583021926647\nCough\tHypereosinophilic Syndrome\t6\t7.888374906577994\nCough\tLeukocytosis\t3\t3.944187453288997\nCough\tLymphocytosis\t2\t2.6294583021926647\nCough\tChediak-Higashi Syndrome\t1\t1.3147291510963324\nCough\tGranulomatous Disease, Chronic\t2\t2.6294583021926647\nCough\tJobs Syndrome 0.342110379
## Mandibular Diseases 0.010256138
## Silo Fillers Disease\t1\t1.3147291510963324\nCough\tAnti-Glomerular Basement Membrane Disease\t3\t3.944187453288997\nCough\tHistiocytosis, Langerhans-Cell\t10\t13.147291510963324\nCough\tIdiopathic Pulmonary Fibrosis\t29\t38.12714538179364\nCough\tPneumoconiosis\t19\t24.979853870830315\nCough\tAsbestosis\t9\t11.83256235986699\nCough\tByssinosis\t4\t5.2589166043853295\nCough\tSilicosis\t8\t10.517833208770659\nCough\tSarcoidosis, Pulmonary\t20\t26.29458302192665\nCough\tWegener Granulomatosis\t9\t11.83256235986699\nCough\tLung Diseases, Obstructive\t93\t122.26981105195891\nCough\tPulmonary Disease, Chronic Obstructive\t90\t118.3256235986699\nCough\tLung Injury\t1\t1.3147291510963324\nCough\tMeconium Aspiration Syndrome\t1\t1.3147291510963324\nCough\tBronchopulmonary Dysplasia\t2\t2.6294583021926647\nCough\tPneumonia\t95\t124.89926935415157\nCough\tPleuropneumonia\t1\t1.3147291510963324\nCough\tPneumonia, Aspiration\t35\t46.01552028837163\nCough\tPneumonia, Lipid\t5\t6.573645755481662\nCough\tPulmonary Alveolar Proteinosis\t7\t9.203104057674327\nCough\tPulmonary Atelectasis\t20\t26.29458302192665\nCough\tMiddle Lobe Syndrome\t5\t6.573645755481662\nCough\tPulmonary Edema\t21\t27.60931217302298\nCough\tPulmonary Embolism\t22\t28.92404132411931\nCough\tPulmonary Emphysema\t31\t40.756603683986306\nCough\tLung, Hyperlucent\t1\t1.3147291510963324\nCough\tPulmonary Eosinophilia\t30\t39.44187453288997\nCough\tPulmonary Fibrosis\t27\t35.49768707960097\nCough\tPulmonary Veno-Occlusive Disease\t1\t1.3147291510963324\nCough\tRespiratory Distress Syndrome, Adult\t8\t10.517833208770659\nCough\tRespiratory Distress Syndrome, Newborn\t6\t7.888374906577994\nCough\tScimitar Syndrome\t2\t2.6294583021926647\nCough\tNose Diseases\t6\t7.888374906577994\nCough\tEpistaxis\t2\t2.6294583021926647\nCough\tNasal Obstruction\t4\t5.2589166043853295\nCough\tNasal Polyps\t1\t1.3147291510963324\nCough\tParanasal Sinus Diseases\t3\t3.944187453288997\nCough\tSinusitis\t46\t60.47754095043129\nCough\tMaxillary Sinusitis\t2\t2.6294583021926647\nCough\tRhinitis\t54\t70.99537415920194\nCough\tRhinitis, Allergic, Perennial\t18\t23.66512471973398\nCough\tRhinitis, Allergic, Seasonal\t24\t31.553499626311975\nCough\tRhinitis, Atrophic\t1\t1.3147291510963324\nCough\tRhinitis, Vasomotor\t1\t1.3147291510963324\nCough\tPleural Diseases\t11\t14.462020662059656\nCough\tChylothorax\t1\t1.3147291510963324\nCough\tHydrothorax\t2\t2.6294583021926647\nCough\tPleural Effusion\t21\t27.60931217302298\nCough\tPleurisy\t9\t11.83256235986699\nCough\tPneumothorax\t23\t30.238770475215645\nCough\tRespiration Disorders\t72\t94.66049887893593\nCough\tAltitude Sickness\t5\t6.573645755481662\nCough\tApnea\t9\t11.83256235986699\nCough\tSleep Apnea Syndromes\t13\t17.09147896425232\nCough\tSleep Apnea, Central\t1\t1.3147291510963324\nCough\tSleep Apnea, Obstructive\t5\t6.573645755481662\nCough\tCough\t4598\t6045.124636740937\nCough\tDyspnea\t155\t203.78301841993152\nCough\tDyspnea, Paroxysmal\t2\t2.6294583021926647\nCough\tHyperventilation\t10\t13.147291510963324\nCough\tMouth Breathing\t2\t2.6294583021926647\nCough\tRespiratory Aspiration\t13\t17.09147896425232\nCough\tRespiratory Insufficiency\t60\t78.88374906577994\nCough\tAirway Obstruction\t70\t92.03104057674327\nCough\tHypoventilation\t2\t2.6294583021926647\nCough\tRespiratory Paralysis\t4\t5.2589166043853295\nCough\tRespiratory Hypersensitivity\t52\t68.36591585700928\nCough\tRespiratory System Abnormalities\t1\t1.3147291510963324\nCough\tBronchopulmonary Sequestration\t4\t5.2589166043853295\nCough\tRespiratory Tract Fistula\t3\t3.944187453288997\nCough\tEpiglottitis\t4\t5.2589166043853295\nCough\tTracheitis\t10\t13.147291510963324\nCough\tThoracic Diseases\t7\t9.203104057674327\nCough\tMediastinal Diseases\t8\t10.517833208770659\nCough\tMediastinal Emphysema\t20\t26.29458302192665\nCough\tMediastinitis\t1\t1.3147291510963324\nCough\tTracheal Diseases\t52\t68.36591585700928\nCough\tTracheal Stenosis\t14\t18.406208115348655\nCough\tEar Diseases\t1\t1.3147291510963324\nCough\tEarache\t2\t2.6294583021926647\nCough\tHearing Loss, Bilateral\t1\t1.3147291510963324\nCough\tHearing Loss, Functional\t1\t1.3147291510963324\nCough\tLabyrinth Diseases\t1\t1.3147291510963324\nCough\tVertigo\t1\t1.3147291510963324\nCough\tOtitis\t1\t1.3147291510963324\nCough\tOtitis Externa\t1\t1.3147291510963324\nCough\tOtitis Media\t5\t6.573645755481662\nCough\tOtitis Media with Effusion\t1\t1.3147291510963324\nCough\tMultiple Sclerosis\t6\t7.888374906577994\nCough\tMyasthenia Gravis\t1\t1.3147291510963324\nCough\tGuillain-Barre Syndrome\t2\t2.6294583021926647\nCough\tHereditary Sensory and Autonomic Neuropathies\t3\t3.944187453288997\nCough\tGiant Cell Arteritis\t26\t34.18295792850464\nCough\tAutonomic Nervous System Diseases\t4\t5.2589166043853295\nCough\tAdie Syndrome\t4\t5.2589166043853295\nCough\tHypotension, Orthostatic\t1\t1.3147291510963324\nCough\tSyncope, Vasovagal\t2\t2.6294583021926647\nCough\tCentral Nervous System Diseases\t1\t1.3147291510963324\nCough\tBrain Diseases\t3\t3.944187453288997\nCough\tParkinson Disease\t11\t14.462020662059656\nCough\tParkinson Disease, Postencephalitic\t1\t1.3147291510963324\nCough\tSupranuclear Palsy, Progressive\t1\t1.3147291510963324\nCough\tTourette Syndrome\t4\t5.2589166043853295\nCough\tCerebral Palsy\t4\t5.2589166043853295\nCough\tBrain Death\t1\t1.3147291510963324\nCough\tBrain Diseases, Metabolic, Inborn\t1\t1.3147291510963324\nCough\tGlycogen Storage Disease Type II\t2\t2.6294583021926647\nCough\tNiemann-Pick Disease, Type B\t1\t1.3147291510963324\nCough\tBrain Edema\t1\t1.3147291510963324\nCough\tBrain Injuries\t2\t2.6294583021926647\nCough\tPneumocephalus\t3\t3.944187453288997\nCough\tCerebellar Diseases\t1\t1.3147291510963324\nCough\tCerebellar Ataxia\t1\t1.3147291510963324\nCough\tAtaxia Telangiectasia\t1\t1.3147291510963324\nCough\tCerebrovascular Disorders\t7\t9.203104057674327\nCough\tBrain Ischemia\t3\t3.944187453288997\nCough\tBrain Infarction\t1\t1.3147291510963324\nCough\tBrain Stem Infarctions\t1\t1.3147291510963324\nCough\tLateral Medullary Syndrome\t1\t1.3147291510963324\nCough\tCerebral Infarction\t18\t23.66512471973398\nCough\tInfarction, Middle Cerebral Artery\t1\t1.3147291510963324\nCough\tIschemic Attack, Transient\t1\t1.3147291510963324\nCough\tCarotid Artery Diseases\t4\t5.2589166043853295\nCough\tCarotid Artery Thrombosis\t1\t1.3147291510963324\nCough\tCarotid Stenosis\t1\t1.3147291510963324\nCough\tVertebral Artery Dissection\t1\t1.3147291510963324\nCough\tIntracranial Aneurysm\t2\t2.6294583021926647\nCough\tIntracranial Arteriosclerosis\t1\t1.3147291510963324\nCough\tIntracranial Arteriovenous Malformations\t1\t1.3147291510963324\nCough\tIntracranial Embolism and Thrombosis\t2\t2.6294583021926647\nCough\tIntracranial Embolism\t3\t3.944187453288997\nCough\tCerebral Hemorrhage\t4\t5.2589166043853295\nCough\tHematoma, Epidural, Cranial\t2\t2.6294583021926647\nCough\tHematoma, Subdural\t2\t2.6294583021926647\nCough\tSubarachnoid Hemorrhage\t2\t2.6294583021926647\nCough\tStroke\t15\t19.720937266444984\nCough\tVascular Headaches\t1\t1.3147291510963324\nCough\tDementia\t1\t1.3147291510963324\nCough\tCreutzfeldt-Jakob Syndrome\t2\t2.6294583021926647\nCough\tMeningoencephalitis\t2\t2.6294583021926647\nCough\tEpilepsy\t11\t14.462020662059656\nCough\tEpilepsies, Partial\t3\t3.944187453288997\nCough\tEpilepsy, Temporal Lobe\t3\t3.944187453288997\nCough\tSeizures\t10\t13.147291510963324\nCough\tHeadache Disorders\t1\t1.3147291510963324\nCough\tHeadache Disorders, Primary\t2\t2.6294583021926647\nCough\tMigraine Disorders\t4\t5.2589166043853295\nCough\tMigraine without Aura\t1\t1.3147291510963324\nCough\tTension-Type Headache\t1\t1.3147291510963324\nCough\tCluster Headache\t2\t2.6294583021926647\nCough\tParoxysmal Hemicrania\t1\t1.3147291510963324\nCough\tHydrocephalus\t4\t5.2589166043853295\nCough\tHypoxia, Brain\t2\t2.6294583021926647\nCough\tIntracranial Hypertension\t1\t1.3147291510963324\nCough\tHypertensive Encephalopathy\t1\t1.3147291510963324\nCough\tPseudotumor Cerebri\t2\t2.6294583021926647\nCough\tIntracranial Hypotension\t2\t2.6294583021926647\nCough\tSubdural Effusion\t1\t1.3147291510963324\nCough\tMovement Disorders\t2\t2.6294583021926647\nCough\tDyskinesias\t1\t1.3147291510963324\nCough\tTorticollis\t2\t2.6294583021926647\nCough\tEssential Tremor\t1\t1.3147291510963324\nCough\tTic Disorders\t8\t10.517833208770659\nCough\tSpinal Cord Diseases\t2\t2.6294583021926647\nCough\tAmyotrophic Lateral Sclerosis\t18\t23.66512471973398\nCough\tMuscular Atrophy, Spinal\t1\t1.3147291510963324\nCough\tSpinal Muscular Atrophies of Childhood\t3\t3.944187453288997\nCough\tSpinal Cord Injuries\t18\t23.66512471973398\nCough\tSyringomyelia\t5\t6.573645755481662\nCough\tCranial Nerve Diseases\t2\t2.6294583021926647\nCough\tHypoglossal Nerve Diseases\t1\t1.3147291510963324\nCough\tNystagmus, Pathologic\t2\t2.6294583021926647\nCough\tOptic Nerve Diseases\t2\t2.6294583021926647\nCough\tOptic Neuritis\t1\t1.3147291510963324\nCough\tTrigeminal Neuralgia\t1\t1.3147291510963324\nCough\tVagus Nerve Diseases\t6\t7.888374906577994\nCough\tHereditary Sensory and Motor Neuropathy\t3\t3.944187453288997\nCough\tArnold-Chiari Malformation\t14\t18.406208115348655\nCough\tMeningocele\t1\t1.3147291510963324\nCough\tMotor Neuron Disease\t3\t3.944187453288997\nCough\tBulbar Palsy, Progressive\t2\t2.6294583021926647\nCough\tDecerebrate State\t8\t10.517833208770659\nCough\tDystonia\t1\t1.3147291510963324\nCough\tMyoclonus\t1\t1.3147291510963324\nCough\tPsychomotor Agitation\t1\t1.3147291510963324\nCough\tTics\t1\t1.3147291510963324\nCough\tLanguage Disorders\t1\t1.3147291510963324\nCough\tSpeech Disorders\t1\t1.3147291510963324\nCough\tMutism\t1\t1.3147291510963324\nCough\tConfusion\t2\t2.6294583021926647\nCough\tDelirium\t1\t1.3147291510963324\nCough\tConsciousness Disorders\t6\t7.888374906577994\nCough\tUnconsciousness\t2\t2.6294583021926647\nCough\tComa\t3\t3.944187453288997\nCough\tSyncope\t110\t144.62020662059655\nCough\tMemory Disorders\t1\t1.3147291510963324\nCough\tAmnesia\t1\t1.3147291510963324\nCough\tMental Retardation\t1\t1.3147291510963324\nCough\tDown Syndrome\t3\t3.944187453288997\nCough\tHallucinations\t2\t2.6294583021926647\nCough\tNeurogenic Inflammation\t1\t1.3147291510963324\nCough\tMuscular Atrophy\t1\t1.3147291510963324\nCough\tSpasm\t1\t1.3147291510963324\nCough\tPain\t30\t39.44187453288997\nCough\tBack Pain\t4\t5.2589166043853295\nCough\tHeadache\t43\t56.53335349714229\nCough\tNeck Pain\t1\t1.3147291510963324\nCough\tSciatica\t1\t1.3147291510963324\nCough\tParalysis\t2\t2.6294583021926647\nCough\tHemiplegia\t2\t2.6294583021926647\nCough\tParaplegia\t4\t5.2589166043853295\nCough\tQuadriplegia\t14\t18.406208115348655\nCough\tTonic Pupil\t2\t2.6294583021926647\nCough\tSensation Disorders\t1\t1.3147291510963324\nCough\tDizziness\t3\t3.944187453288997\nCough\tOlfaction Disorders\t1\t1.3147291510963324\nCough\tParesthesia\t1\t1.3147291510963324\nCough\tDysgeusia\t1\t1.3147291510963324\nCough\tVision Disorders\t1\t1.3147291510963324\nCough\tBlindness\t4\t5.2589166043853295\nCough\tNeuromuscular Diseases\t36\t47.33024943946796\nCough\tPeripheral Nervous System Diseases\t4\t5.2589166043853295\nCough\tDiabetic Neuropathies\t7\t9.203104057674327\nCough\tMononeuropathies\t1\t1.3147291510963324\nCough\tNerve Compression Syndromes\t4\t5.2589166043853295\nCough\tThoracic Outlet Syndrome\t1\t1.3147291510963324\nCough\tNeuritis\t1\t1.3147291510963324\nCough\tPOEMS Syndrome\t1\t1.3147291510963324\nCough\tNeurotoxicity Syndromes\t1\t1.3147291510963324\nCough\tArsenic Poisoning\t2\t2.6294583021926647\nCough\tSleep Disorders\t7\t9.203104057674327\nCough\tSleep Initiation and Maintenance Disorders\t4\t5.2589166043853295\nCough\tCraniocerebral Trauma\t4\t5.2589166043853295\nCough\tShaken Baby Syndrome\t1\t1.3147291510963324\nCough\tSkull Fractures\t1\t1.3147291510963324\nCough\tConjunctival Diseases\t1\t1.3147291510963324\nCough\tConjunctivitis\t4\t5.2589166043853295\nCough\tConjunctivitis, Allergic\t1\t1.3147291510963324\nCough\tKeratitis\t1\t1.3147291510963324\nCough\tChoroid Hemorrhage\t1\t1.3147291510963324\nCough\tRetinal Hemorrhage\t3\t3.944187453288997\nCough\tEyelid Diseases\t1\t1.3147291510963324\nCough\tBlepharoptosis\t1\t1.3147291510963324\nCough\tLacrimal Apparatus Diseases\t2\t2.6294583021926647\nCough\tGlaucoma\t3\t3.944187453288997\nCough\tGlaucoma, Open-Angle\t1\t1.3147291510963324\nCough\tOcular Hypotension\t1\t1.3147291510963324\nCough\tOrbital Diseases\t3\t3.944187453288997\nCough\tExophthalmos\t2\t2.6294583021926647\nCough\tMyopia\t1\t1.3147291510963324\nCough\tDiabetic Retinopathy\t1\t1.3147291510963324\nCough\tIris Diseases\t1\t1.3147291510963324\nCough\tGenital Diseases, Male\t1\t1.3147291510963324\nCough\tHemospermia\t1\t1.3147291510963324\nCough\tProstatic Hyperplasia\t2\t2.6294583021926647\nCough\tUrologic Diseases\t1\t1.3147291510963324\nCough\tKidney Diseases\t2\t2.6294583021926647\nCough\tDiabetes Insipidus\t1\t1.3147291510963324\nCough\tDiabetes Insipidus, Neurogenic\t1\t1.3147291510963324\nCough\tDiabetic Nephropathies\t1\t1.3147291510963324\nCough\tGlomerulonephritis\t2\t2.6294583021926647\nCough\tGlomerulonephritis, Membranoproliferative\t1\t1.3147291510963324\nCough\tNephrotic Syndrome\t2\t2.6294583021926647\nCough\tRenal Artery Obstruction\t1\t1.3147291510963324\nCough\tRenal Insufficiency\t1\t1.3147291510963324\nCough\tAcute Kidney Injury\t4\t5.2589166043853295\nCough\tKidney Failure, Chronic\t6\t7.888374906577994\nCough\tUrethral Diseases\t1\t1.3147291510963324\nCough\tUrinary Bladder Neck Obstruction\t1\t1.3147291510963324\nCough\tUrinary Bladder, Overactive\t2\t2.6294583021926647\nCough\tUrination Disorders\t6\t7.888374906577994\nCough\tHematuria\t1\t1.3147291510963324\nCough\tOliguria\t1\t1.3147291510963324\nCough\tAlbuminuria\t2\t2.6294583021926647\nCough\tUrinary Incontinence\t28\t36.81241623069731\nCough\tUrinary Incontinence, Stress\t99\t130.1581859585369\nCough\tUrinary Incontinence, Urge\t1\t1.3147291510963324\nCough\tFemale Urogenital Diseases\t1\t1.3147291510963324\nCough\tFallopian Tube Diseases\t1\t1.3147291510963324\nCough\tAnovulation\t1\t1.3147291510963324\nCough\tOvarian Hyperstimulation Syndrome\t1\t1.3147291510963324\nCough\tEndometriosis\t4\t5.2589166043853295\nCough\tInfertility, Female\t1\t1.3147291510963324\nCough\tUterine Cervical Incompetence\t1\t1.3147291510963324\nCough\tUterine Prolapse\t4\t5.2589166043853295\nCough\tVaginal Diseases\t2\t2.6294583021926647\nCough\tPregnancy Complications\t5\t6.573645755481662\nCough\tAbruptio Placentae\t1\t1.3147291510963324\nCough\tFetal Membranes, Premature Rupture\t1\t1.3147291510963324\nCough\tPregnancy Complications, Cardiovascular\t1\t1.3147291510963324\nCough\tPregnancy in Diabetics\t1\t1.3147291510963324\nCough\tPuerperal Disorders\t3\t3.944187453288997\nCough\tCardiovascular Abnormalities\t2\t2.6294583021926647\nCough\tHeart Defects, Congenital\t1\t1.3147291510963324\nCough\tCoronary Vessel Anomalies\t1\t1.3147291510963324\nCough\tHeart Septal Defects\t1\t1.3147291510963324\nCough\tHeart Septal Defects, Atrial\t11\t14.462020662059656\nCough\tHeart Septal Defects, Ventricular\t1\t1.3147291510963324\nCough\tTetralogy of Fallot\t1\t1.3147291510963324\nCough\tTransposition of Great Vessels\t1\t1.3147291510963324\nCough\tVascular Malformations\t1\t1.3147291510963324\nCough\tArteriovenous Malformations\t2\t2.6294583021926647\nCough\tVascular Fistula\t1\t1.3147291510963324\nCough\tArterio-Arterial Fistula\t1\t1.3147291510963324\nCough\tHeart Diseases\t11\t14.462020662059656\nCough\tArrhythmias, Cardiac\t15\t19.720937266444984\nCough\tSick Sinus Syndrome\t1\t1.3147291510963324\nCough\tAtrial Fibrillation\t3\t3.944187453288997\nCough\tBradycardia\t1\t1.3147291510963324\nCough\tAtrial Premature Complexes\t3\t3.944187453288997\nCough\tVentricular Premature Complexes\t4\t5.2589166043853295\nCough\tHeart Block\t8\t10.517833208770659\nCough\tAtrioventricular Block\t3\t3.944187453288997\nCough\tLong QT Syndrome\t2\t2.6294583021926647\nCough\tTachycardia\t8\t10.517833208770659\nCough\tTachycardia, Paroxysmal\t1\t1.3147291510963324\nCough\tTachycardia, Supraventricular\t2\t2.6294583021926647\nCough\tTachycardia, Ectopic Atrial\t1\t1.3147291510963324\nCough\tTachycardia, Ventricular\t2\t2.6294583021926647\nCough\tTorsades de Pointes\t1\t1.3147291510963324\nCough\tVentricular Fibrillation\t11\t14.462020662059656\nCough\tCardiac Output, Low\t3\t3.944187453288997\nCough\tCardiac Tamponade\t1\t1.3147291510963324\nCough\tCardiomegaly\t1\t1.3147291510963324\nCough\tHypertrophy, Left Ventricular\t2\t2.6294583021926647\nCough\tHypertrophy, Right Ventricular\t1\t1.3147291510963324\nCough\tCardiomyopathies\t4\t5.2589166043853295\nCough\tCardiomyopathy, Hypertrophic\t2\t2.6294583021926647\nCough\tCardiomyopathy, Restrictive\t1\t1.3147291510963324\nCough\tMyocardial Reperfusion Injury\t1\t1.3147291510963324\nCough\tMyocarditis\t4\t5.2589166043853295\nCough\tHeart Arrest\t11\t14.462020662059656\nCough\tHeart Failure\t31\t40.756603683986306\nCough\tAortic Valve Insufficiency\t2\t2.6294583021926647\nCough\tMitral Valve Prolapse\t1\t1.3147291510963324\nCough\tMitral Valve Insufficiency\t1\t1.3147291510963324\nCough\tMitral Valve Stenosis\t4\t5.2589166043853295\nCough\tTricuspid Valve Stenosis\t1\t1.3147291510963324\nCough\tMyocardial Ischemia\t2\t2.6294583021926647\nCough\tAngina Pectoris\t2\t2.6294583021926647\nCough\tAngina, Unstable\t1\t1.3147291510963324\nCough\tCoronary Disease\t7\t9.203104057674327\nCough\tCoronary Artery Disease\t7\t9.203104057674327\nCough\tMyocardial Infarction\t13\t17.09147896425232\nCough\tShock, Cardiogenic\t2\t2.6294583021926647\nCough\tPericardial Effusion\t3\t3.944187453288997\nCough\tPericarditis\t6\t7.888374906577994\nCough\tPericarditis, Constrictive\t3\t3.944187453288997\nCough\tPneumopericardium\t3\t3.944187453288997\nCough\tPulmonary Heart Disease\t6\t7.888374906577994\nCough\tVentricular Dysfunction, Left\t5\t6.573645755481662\nCough\tTakotsubo Cardiomyopathy\t1\t1.3147291510963324\nCough\tVentricular Outflow Obstruction\t1\t1.3147291510963324\nCough\tVascular Diseases\t2\t2.6294583021926647\nCough\tAneurysm\t5\t6.573645755481662\nCough\tAneurysm, Dissecting\t4\t5.2589166043853295\nCough\tAneurysm, False\t5\t6.573645755481662\nCough\tAneurysm, Ruptured\t2\t2.6294583021926647\nCough\tAortic Rupture\t3\t3.944187453288997\nCough\tAortic Aneurysm\t3\t3.944187453288997\nCough\tAortic Aneurysm, Thoracic\t9\t11.83256235986699\nCough\tAngioedema\t9\t11.83256235986699\nCough\tAortic Diseases\t1\t1.3147291510963324\nCough\tAortitis\t2\t2.6294583021926647\nCough\tArterial Occlusive Diseases\t4\t5.2589166043853295\nCough\tArteriosclerosis\t1\t1.3147291510963324\nCough\tArteritis\t2\t2.6294583021926647\nCough\tDiabetic Angiopathies\t1\t1.3147291510963324\nCough\tDiabetic Foot\t1\t1.3147291510963324\nCough\tEmbolism\t3\t3.944187453288997\nCough\tEmbolism, Air\t13\t17.09147896425232\nCough\tEmbolism, Fat\t1\t1.3147291510963324\nCough\tEmbolism, Paradoxical\t2\t2.6294583021926647\nCough\tVenous Thromboembolism\t1\t1.3147291510963324\nCough\tThrombosis\t3\t3.944187453288997\nCough\tVenous Thrombosis\t1\t1.3147291510963324\nCough\tThrombophlebitis\t3\t3.944187453288997\nCough\tEhlers-Danlos Syndrome\t2\t2.6294583021926647\nCough\tHypertension\t93\t122.26981105195891\nCough\tHypotension\t7\t9.203104057674327\nCough\tSuperior Vena Cava Syndrome\t4\t5.2589166043853295\nCough\tVaricose Veins\t3\t3.944187453288997\nCough\tVasculitis\t3\t3.944187453288997\nCough\tMucocutaneous Lymph Node Syndrome\t7\t9.203104057674327\nCough\tPurpura, Schoenlein-Henoch\t1\t1.3147291510963324\nCough\tChurg-Strauss Syndrome\t3\t3.944187453288997\nCough\tVasculitis, Leukocytoclastic, Cutaneous\t2\t2.6294583021926647\nCough\tVenous Insufficiency\t2\t2.6294583021926647\nCough\tHematologic Diseases\t1\t1.3147291510963324\nCough\tAnemia\t5\t6.573645755481662\nCough\tAnemia, Aplastic\t1\t1.3147291510963324\nCough\tAnemia, Sickle Cell\t13\t17.09147896425232\nCough\tSickle Cell Trait\t1\t1.3147291510963324\nCough\tbeta-Thalassemia\t2\t2.6294583021926647\nCough\tAnemia, Pernicious\t1\t1.3147291510963324\nCough\tAnemia, Refractory\t1\t1.3147291510963324\nCough\tBlood Coagulation Disorders\t1\t1.3147291510963324\nCough\tHemophilia A\t1\t1.3147291510963324\nCough\tWiskott-Aldrich Syndrome\t1\t1.3147291510963324\nCough\tEcchymosis\t2\t2.6294583021926647\nCough\tPurpura\t3\t3.944187453288997\nCough\tThrombocytopenia\t1\t1.3147291510963324\nCough\tAgammaglobulinemia\t2\t2.6294583021926647\nCough\tIgG Deficiency\t1\t1.3147291510963324\nCough\tMyelodysplastic Syndromes\t1\t1.3147291510963324\nCough\tPolycythemia Vera\t3\t3.944187453288997\nCough\tEosinophilia\t48\t63.10699925262395\nCough\tAngiolymphoid Hyperplasia with Eosinophilia\t2\t2.6294583021926647\nCough\tHypereosinophilic Syndrome\t6\t7.888374906577994\nCough\tLeukocytosis\t3\t3.944187453288997\nCough\tLymphocytosis\t2\t2.6294583021926647\nCough\tChediak-Higashi Syndrome\t1\t1.3147291510963324\nCough\tGranulomatous Disease, Chronic\t2\t2.6294583021926647\nCough\tJobs Syndrome
## Lupus Nephritis 0.0000000
## Uterine Cervical Diseases 0.0000000
## Tuberculosis 0.3421104
## Silo Fillers Disease\t1\t1.3147291510963324\nCough\tAnti-Glomerular Basement Membrane Disease\t3\t3.944187453288997\nCough\tHistiocytosis, Langerhans-Cell\t10\t13.147291510963324\nCough\tIdiopathic Pulmonary Fibrosis\t29\t38.12714538179364\nCough\tPneumoconiosis\t19\t24.979853870830315\nCough\tAsbestosis\t9\t11.83256235986699\nCough\tByssinosis\t4\t5.2589166043853295\nCough\tSilicosis\t8\t10.517833208770659\nCough\tSarcoidosis, Pulmonary\t20\t26.29458302192665\nCough\tWegener Granulomatosis\t9\t11.83256235986699\nCough\tLung Diseases, Obstructive\t93\t122.26981105195891\nCough\tPulmonary Disease, Chronic Obstructive\t90\t118.3256235986699\nCough\tLung Injury\t1\t1.3147291510963324\nCough\tMeconium Aspiration Syndrome\t1\t1.3147291510963324\nCough\tBronchopulmonary Dysplasia\t2\t2.6294583021926647\nCough\tPneumonia\t95\t124.89926935415157\nCough\tPleuropneumonia\t1\t1.3147291510963324\nCough\tPneumonia, Aspiration\t35\t46.01552028837163\nCough\tPneumonia, Lipid\t5\t6.573645755481662\nCough\tPulmonary Alveolar Proteinosis\t7\t9.203104057674327\nCough\tPulmonary Atelectasis\t20\t26.29458302192665\nCough\tMiddle Lobe Syndrome\t5\t6.573645755481662\nCough\tPulmonary Edema\t21\t27.60931217302298\nCough\tPulmonary Embolism\t22\t28.92404132411931\nCough\tPulmonary Emphysema\t31\t40.756603683986306\nCough\tLung, Hyperlucent\t1\t1.3147291510963324\nCough\tPulmonary Eosinophilia\t30\t39.44187453288997\nCough\tPulmonary Fibrosis\t27\t35.49768707960097\nCough\tPulmonary Veno-Occlusive Disease\t1\t1.3147291510963324\nCough\tRespiratory Distress Syndrome, Adult\t8\t10.517833208770659\nCough\tRespiratory Distress Syndrome, Newborn\t6\t7.888374906577994\nCough\tScimitar Syndrome\t2\t2.6294583021926647\nCough\tNose Diseases\t6\t7.888374906577994\nCough\tEpistaxis\t2\t2.6294583021926647\nCough\tNasal Obstruction\t4\t5.2589166043853295\nCough\tNasal Polyps\t1\t1.3147291510963324\nCough\tParanasal Sinus Diseases\t3\t3.944187453288997\nCough\tSinusitis\t46\t60.47754095043129\nCough\tMaxillary Sinusitis\t2\t2.6294583021926647\nCough\tRhinitis\t54\t70.99537415920194\nCough\tRhinitis, Allergic, Perennial\t18\t23.66512471973398\nCough\tRhinitis, Allergic, Seasonal\t24\t31.553499626311975\nCough\tRhinitis, Atrophic\t1\t1.3147291510963324\nCough\tRhinitis, Vasomotor\t1\t1.3147291510963324\nCough\tPleural Diseases\t11\t14.462020662059656\nCough\tChylothorax\t1\t1.3147291510963324\nCough\tHydrothorax\t2\t2.6294583021926647\nCough\tPleural Effusion\t21\t27.60931217302298\nCough\tPleurisy\t9\t11.83256235986699\nCough\tPneumothorax\t23\t30.238770475215645\nCough\tRespiration Disorders\t72\t94.66049887893593\nCough\tAltitude Sickness\t5\t6.573645755481662\nCough\tApnea\t9\t11.83256235986699\nCough\tSleep Apnea Syndromes\t13\t17.09147896425232\nCough\tSleep Apnea, Central\t1\t1.3147291510963324\nCough\tSleep Apnea, Obstructive\t5\t6.573645755481662\nCough\tCough\t4598\t6045.124636740937\nCough\tDyspnea\t155\t203.78301841993152\nCough\tDyspnea, Paroxysmal\t2\t2.6294583021926647\nCough\tHyperventilation\t10\t13.147291510963324\nCough\tMouth Breathing\t2\t2.6294583021926647\nCough\tRespiratory Aspiration\t13\t17.09147896425232\nCough\tRespiratory Insufficiency\t60\t78.88374906577994\nCough\tAirway Obstruction\t70\t92.03104057674327\nCough\tHypoventilation\t2\t2.6294583021926647\nCough\tRespiratory Paralysis\t4\t5.2589166043853295\nCough\tRespiratory Hypersensitivity\t52\t68.36591585700928\nCough\tRespiratory System Abnormalities\t1\t1.3147291510963324\nCough\tBronchopulmonary Sequestration\t4\t5.2589166043853295\nCough\tRespiratory Tract Fistula\t3\t3.944187453288997\nCough\tEpiglottitis\t4\t5.2589166043853295\nCough\tTracheitis\t10\t13.147291510963324\nCough\tThoracic Diseases\t7\t9.203104057674327\nCough\tMediastinal Diseases\t8\t10.517833208770659\nCough\tMediastinal Emphysema\t20\t26.29458302192665\nCough\tMediastinitis\t1\t1.3147291510963324\nCough\tTracheal Diseases\t52\t68.36591585700928\nCough\tTracheal Stenosis\t14\t18.406208115348655\nCough\tEar Diseases\t1\t1.3147291510963324\nCough\tEarache\t2\t2.6294583021926647\nCough\tHearing Loss, Bilateral\t1\t1.3147291510963324\nCough\tHearing Loss, Functional\t1\t1.3147291510963324\nCough\tLabyrinth Diseases\t1\t1.3147291510963324\nCough\tVertigo\t1\t1.3147291510963324\nCough\tOtitis\t1\t1.3147291510963324\nCough\tOtitis Externa\t1\t1.3147291510963324\nCough\tOtitis Media\t5\t6.573645755481662\nCough\tOtitis Media with Effusion\t1\t1.3147291510963324\nCough\tMultiple Sclerosis\t6\t7.888374906577994\nCough\tMyasthenia Gravis\t1\t1.3147291510963324\nCough\tGuillain-Barre Syndrome\t2\t2.6294583021926647\nCough\tHereditary Sensory and Autonomic Neuropathies\t3\t3.944187453288997\nCough\tGiant Cell Arteritis\t26\t34.18295792850464\nCough\tAutonomic Nervous System Diseases\t4\t5.2589166043853295\nCough\tAdie Syndrome\t4\t5.2589166043853295\nCough\tHypotension, Orthostatic\t1\t1.3147291510963324\nCough\tSyncope, Vasovagal\t2\t2.6294583021926647\nCough\tCentral Nervous System Diseases\t1\t1.3147291510963324\nCough\tBrain Diseases\t3\t3.944187453288997\nCough\tParkinson Disease\t11\t14.462020662059656\nCough\tParkinson Disease, Postencephalitic\t1\t1.3147291510963324\nCough\tSupranuclear Palsy, Progressive\t1\t1.3147291510963324\nCough\tTourette Syndrome\t4\t5.2589166043853295\nCough\tCerebral Palsy\t4\t5.2589166043853295\nCough\tBrain Death\t1\t1.3147291510963324\nCough\tBrain Diseases, Metabolic, Inborn\t1\t1.3147291510963324\nCough\tGlycogen Storage Disease Type II\t2\t2.6294583021926647\nCough\tNiemann-Pick Disease, Type B\t1\t1.3147291510963324\nCough\tBrain Edema\t1\t1.3147291510963324\nCough\tBrain Injuries\t2\t2.6294583021926647\nCough\tPneumocephalus\t3\t3.944187453288997\nCough\tCerebellar Diseases\t1\t1.3147291510963324\nCough\tCerebellar Ataxia\t1\t1.3147291510963324\nCough\tAtaxia Telangiectasia\t1\t1.3147291510963324\nCough\tCerebrovascular Disorders\t7\t9.203104057674327\nCough\tBrain Ischemia\t3\t3.944187453288997\nCough\tBrain Infarction\t1\t1.3147291510963324\nCough\tBrain Stem Infarctions\t1\t1.3147291510963324\nCough\tLateral Medullary Syndrome\t1\t1.3147291510963324\nCough\tCerebral Infarction\t18\t23.66512471973398\nCough\tInfarction, Middle Cerebral Artery\t1\t1.3147291510963324\nCough\tIschemic Attack, Transient\t1\t1.3147291510963324\nCough\tCarotid Artery Diseases\t4\t5.2589166043853295\nCough\tCarotid Artery Thrombosis\t1\t1.3147291510963324\nCough\tCarotid Stenosis\t1\t1.3147291510963324\nCough\tVertebral Artery Dissection\t1\t1.3147291510963324\nCough\tIntracranial Aneurysm\t2\t2.6294583021926647\nCough\tIntracranial Arteriosclerosis\t1\t1.3147291510963324\nCough\tIntracranial Arteriovenous Malformations\t1\t1.3147291510963324\nCough\tIntracranial Embolism and Thrombosis\t2\t2.6294583021926647\nCough\tIntracranial Embolism\t3\t3.944187453288997\nCough\tCerebral Hemorrhage\t4\t5.2589166043853295\nCough\tHematoma, Epidural, Cranial\t2\t2.6294583021926647\nCough\tHematoma, Subdural\t2\t2.6294583021926647\nCough\tSubarachnoid Hemorrhage\t2\t2.6294583021926647\nCough\tStroke\t15\t19.720937266444984\nCough\tVascular Headaches\t1\t1.3147291510963324\nCough\tDementia\t1\t1.3147291510963324\nCough\tCreutzfeldt-Jakob Syndrome\t2\t2.6294583021926647\nCough\tMeningoencephalitis\t2\t2.6294583021926647\nCough\tEpilepsy\t11\t14.462020662059656\nCough\tEpilepsies, Partial\t3\t3.944187453288997\nCough\tEpilepsy, Temporal Lobe\t3\t3.944187453288997\nCough\tSeizures\t10\t13.147291510963324\nCough\tHeadache Disorders\t1\t1.3147291510963324\nCough\tHeadache Disorders, Primary\t2\t2.6294583021926647\nCough\tMigraine Disorders\t4\t5.2589166043853295\nCough\tMigraine without Aura\t1\t1.3147291510963324\nCough\tTension-Type Headache\t1\t1.3147291510963324\nCough\tCluster Headache\t2\t2.6294583021926647\nCough\tParoxysmal Hemicrania\t1\t1.3147291510963324\nCough\tHydrocephalus\t4\t5.2589166043853295\nCough\tHypoxia, Brain\t2\t2.6294583021926647\nCough\tIntracranial Hypertension\t1\t1.3147291510963324\nCough\tHypertensive Encephalopathy\t1\t1.3147291510963324\nCough\tPseudotumor Cerebri\t2\t2.6294583021926647\nCough\tIntracranial Hypotension\t2\t2.6294583021926647\nCough\tSubdural Effusion\t1\t1.3147291510963324\nCough\tMovement Disorders\t2\t2.6294583021926647\nCough\tDyskinesias\t1\t1.3147291510963324\nCough\tTorticollis\t2\t2.6294583021926647\nCough\tEssential Tremor\t1\t1.3147291510963324\nCough\tTic Disorders\t8\t10.517833208770659\nCough\tSpinal Cord Diseases\t2\t2.6294583021926647\nCough\tAmyotrophic Lateral Sclerosis\t18\t23.66512471973398\nCough\tMuscular Atrophy, Spinal\t1\t1.3147291510963324\nCough\tSpinal Muscular Atrophies of Childhood\t3\t3.944187453288997\nCough\tSpinal Cord Injuries\t18\t23.66512471973398\nCough\tSyringomyelia\t5\t6.573645755481662\nCough\tCranial Nerve Diseases\t2\t2.6294583021926647\nCough\tHypoglossal Nerve Diseases\t1\t1.3147291510963324\nCough\tNystagmus, Pathologic\t2\t2.6294583021926647\nCough\tOptic Nerve Diseases\t2\t2.6294583021926647\nCough\tOptic Neuritis\t1\t1.3147291510963324\nCough\tTrigeminal Neuralgia\t1\t1.3147291510963324\nCough\tVagus Nerve Diseases\t6\t7.888374906577994\nCough\tHereditary Sensory and Motor Neuropathy\t3\t3.944187453288997\nCough\tArnold-Chiari Malformation\t14\t18.406208115348655\nCough\tMeningocele\t1\t1.3147291510963324\nCough\tMotor Neuron Disease\t3\t3.944187453288997\nCough\tBulbar Palsy, Progressive\t2\t2.6294583021926647\nCough\tDecerebrate State\t8\t10.517833208770659\nCough\tDystonia\t1\t1.3147291510963324\nCough\tMyoclonus\t1\t1.3147291510963324\nCough\tPsychomotor Agitation\t1\t1.3147291510963324\nCough\tTics\t1\t1.3147291510963324\nCough\tLanguage Disorders\t1\t1.3147291510963324\nCough\tSpeech Disorders\t1\t1.3147291510963324\nCough\tMutism\t1\t1.3147291510963324\nCough\tConfusion\t2\t2.6294583021926647\nCough\tDelirium\t1\t1.3147291510963324\nCough\tConsciousness Disorders\t6\t7.888374906577994\nCough\tUnconsciousness\t2\t2.6294583021926647\nCough\tComa\t3\t3.944187453288997\nCough\tSyncope\t110\t144.62020662059655\nCough\tMemory Disorders\t1\t1.3147291510963324\nCough\tAmnesia\t1\t1.3147291510963324\nCough\tMental Retardation\t1\t1.3147291510963324\nCough\tDown Syndrome\t3\t3.944187453288997\nCough\tHallucinations\t2\t2.6294583021926647\nCough\tNeurogenic Inflammation\t1\t1.3147291510963324\nCough\tMuscular Atrophy\t1\t1.3147291510963324\nCough\tSpasm\t1\t1.3147291510963324\nCough\tPain\t30\t39.44187453288997\nCough\tBack Pain\t4\t5.2589166043853295\nCough\tHeadache\t43\t56.53335349714229\nCough\tNeck Pain\t1\t1.3147291510963324\nCough\tSciatica\t1\t1.3147291510963324\nCough\tParalysis\t2\t2.6294583021926647\nCough\tHemiplegia\t2\t2.6294583021926647\nCough\tParaplegia\t4\t5.2589166043853295\nCough\tQuadriplegia\t14\t18.406208115348655\nCough\tTonic Pupil\t2\t2.6294583021926647\nCough\tSensation Disorders\t1\t1.3147291510963324\nCough\tDizziness\t3\t3.944187453288997\nCough\tOlfaction Disorders\t1\t1.3147291510963324\nCough\tParesthesia\t1\t1.3147291510963324\nCough\tDysgeusia\t1\t1.3147291510963324\nCough\tVision Disorders\t1\t1.3147291510963324\nCough\tBlindness\t4\t5.2589166043853295\nCough\tNeuromuscular Diseases\t36\t47.33024943946796\nCough\tPeripheral Nervous System Diseases\t4\t5.2589166043853295\nCough\tDiabetic Neuropathies\t7\t9.203104057674327\nCough\tMononeuropathies\t1\t1.3147291510963324\nCough\tNerve Compression Syndromes\t4\t5.2589166043853295\nCough\tThoracic Outlet Syndrome\t1\t1.3147291510963324\nCough\tNeuritis\t1\t1.3147291510963324\nCough\tPOEMS Syndrome\t1\t1.3147291510963324\nCough\tNeurotoxicity Syndromes\t1\t1.3147291510963324\nCough\tArsenic Poisoning\t2\t2.6294583021926647\nCough\tSleep Disorders\t7\t9.203104057674327\nCough\tSleep Initiation and Maintenance Disorders\t4\t5.2589166043853295\nCough\tCraniocerebral Trauma\t4\t5.2589166043853295\nCough\tShaken Baby Syndrome\t1\t1.3147291510963324\nCough\tSkull Fractures\t1\t1.3147291510963324\nCough\tConjunctival Diseases\t1\t1.3147291510963324\nCough\tConjunctivitis\t4\t5.2589166043853295\nCough\tConjunctivitis, Allergic\t1\t1.3147291510963324\nCough\tKeratitis\t1\t1.3147291510963324\nCough\tChoroid Hemorrhage\t1\t1.3147291510963324\nCough\tRetinal Hemorrhage\t3\t3.944187453288997\nCough\tEyelid Diseases\t1\t1.3147291510963324\nCough\tBlepharoptosis\t1\t1.3147291510963324\nCough\tLacrimal Apparatus Diseases\t2\t2.6294583021926647\nCough\tGlaucoma\t3\t3.944187453288997\nCough\tGlaucoma, Open-Angle\t1\t1.3147291510963324\nCough\tOcular Hypotension\t1\t1.3147291510963324\nCough\tOrbital Diseases\t3\t3.944187453288997\nCough\tExophthalmos\t2\t2.6294583021926647\nCough\tMyopia\t1\t1.3147291510963324\nCough\tDiabetic Retinopathy\t1\t1.3147291510963324\nCough\tIris Diseases\t1\t1.3147291510963324\nCough\tGenital Diseases, Male\t1\t1.3147291510963324\nCough\tHemospermia\t1\t1.3147291510963324\nCough\tProstatic Hyperplasia\t2\t2.6294583021926647\nCough\tUrologic Diseases\t1\t1.3147291510963324\nCough\tKidney Diseases\t2\t2.6294583021926647\nCough\tDiabetes Insipidus\t1\t1.3147291510963324\nCough\tDiabetes Insipidus, Neurogenic\t1\t1.3147291510963324\nCough\tDiabetic Nephropathies\t1\t1.3147291510963324\nCough\tGlomerulonephritis\t2\t2.6294583021926647\nCough\tGlomerulonephritis, Membranoproliferative\t1\t1.3147291510963324\nCough\tNephrotic Syndrome\t2\t2.6294583021926647\nCough\tRenal Artery Obstruction\t1\t1.3147291510963324\nCough\tRenal Insufficiency\t1\t1.3147291510963324\nCough\tAcute Kidney Injury\t4\t5.2589166043853295\nCough\tKidney Failure, Chronic\t6\t7.888374906577994\nCough\tUrethral Diseases\t1\t1.3147291510963324\nCough\tUrinary Bladder Neck Obstruction\t1\t1.3147291510963324\nCough\tUrinary Bladder, Overactive\t2\t2.6294583021926647\nCough\tUrination Disorders\t6\t7.888374906577994\nCough\tHematuria\t1\t1.3147291510963324\nCough\tOliguria\t1\t1.3147291510963324\nCough\tAlbuminuria\t2\t2.6294583021926647\nCough\tUrinary Incontinence\t28\t36.81241623069731\nCough\tUrinary Incontinence, Stress\t99\t130.1581859585369\nCough\tUrinary Incontinence, Urge\t1\t1.3147291510963324\nCough\tFemale Urogenital Diseases\t1\t1.3147291510963324\nCough\tFallopian Tube Diseases\t1\t1.3147291510963324\nCough\tAnovulation\t1\t1.3147291510963324\nCough\tOvarian Hyperstimulation Syndrome\t1\t1.3147291510963324\nCough\tEndometriosis\t4\t5.2589166043853295\nCough\tInfertility, Female\t1\t1.3147291510963324\nCough\tUterine Cervical Incompetence\t1\t1.3147291510963324\nCough\tUterine Prolapse\t4\t5.2589166043853295\nCough\tVaginal Diseases\t2\t2.6294583021926647\nCough\tPregnancy Complications\t5\t6.573645755481662\nCough\tAbruptio Placentae\t1\t1.3147291510963324\nCough\tFetal Membranes, Premature Rupture\t1\t1.3147291510963324\nCough\tPregnancy Complications, Cardiovascular\t1\t1.3147291510963324\nCough\tPregnancy in Diabetics\t1\t1.3147291510963324\nCough\tPuerperal Disorders\t3\t3.944187453288997\nCough\tCardiovascular Abnormalities\t2\t2.6294583021926647\nCough\tHeart Defects, Congenital\t1\t1.3147291510963324\nCough\tCoronary Vessel Anomalies\t1\t1.3147291510963324\nCough\tHeart Septal Defects\t1\t1.3147291510963324\nCough\tHeart Septal Defects, Atrial\t11\t14.462020662059656\nCough\tHeart Septal Defects, Ventricular\t1\t1.3147291510963324\nCough\tTetralogy of Fallot\t1\t1.3147291510963324\nCough\tTransposition of Great Vessels\t1\t1.3147291510963324\nCough\tVascular Malformations\t1\t1.3147291510963324\nCough\tArteriovenous Malformations\t2\t2.6294583021926647\nCough\tVascular Fistula\t1\t1.3147291510963324\nCough\tArterio-Arterial Fistula\t1\t1.3147291510963324\nCough\tHeart Diseases\t11\t14.462020662059656\nCough\tArrhythmias, Cardiac\t15\t19.720937266444984\nCough\tSick Sinus Syndrome\t1\t1.3147291510963324\nCough\tAtrial Fibrillation\t3\t3.944187453288997\nCough\tBradycardia\t1\t1.3147291510963324\nCough\tAtrial Premature Complexes\t3\t3.944187453288997\nCough\tVentricular Premature Complexes\t4\t5.2589166043853295\nCough\tHeart Block\t8\t10.517833208770659\nCough\tAtrioventricular Block\t3\t3.944187453288997\nCough\tLong QT Syndrome\t2\t2.6294583021926647\nCough\tTachycardia\t8\t10.517833208770659\nCough\tTachycardia, Paroxysmal\t1\t1.3147291510963324\nCough\tTachycardia, Supraventricular\t2\t2.6294583021926647\nCough\tTachycardia, Ectopic Atrial\t1\t1.3147291510963324\nCough\tTachycardia, Ventricular\t2\t2.6294583021926647\nCough\tTorsades de Pointes\t1\t1.3147291510963324\nCough\tVentricular Fibrillation\t11\t14.462020662059656\nCough\tCardiac Output, Low\t3\t3.944187453288997\nCough\tCardiac Tamponade\t1\t1.3147291510963324\nCough\tCardiomegaly\t1\t1.3147291510963324\nCough\tHypertrophy, Left Ventricular\t2\t2.6294583021926647\nCough\tHypertrophy, Right Ventricular\t1\t1.3147291510963324\nCough\tCardiomyopathies\t4\t5.2589166043853295\nCough\tCardiomyopathy, Hypertrophic\t2\t2.6294583021926647\nCough\tCardiomyopathy, Restrictive\t1\t1.3147291510963324\nCough\tMyocardial Reperfusion Injury\t1\t1.3147291510963324\nCough\tMyocarditis\t4\t5.2589166043853295\nCough\tHeart Arrest\t11\t14.462020662059656\nCough\tHeart Failure\t31\t40.756603683986306\nCough\tAortic Valve Insufficiency\t2\t2.6294583021926647\nCough\tMitral Valve Prolapse\t1\t1.3147291510963324\nCough\tMitral Valve Insufficiency\t1\t1.3147291510963324\nCough\tMitral Valve Stenosis\t4\t5.2589166043853295\nCough\tTricuspid Valve Stenosis\t1\t1.3147291510963324\nCough\tMyocardial Ischemia\t2\t2.6294583021926647\nCough\tAngina Pectoris\t2\t2.6294583021926647\nCough\tAngina, Unstable\t1\t1.3147291510963324\nCough\tCoronary Disease\t7\t9.203104057674327\nCough\tCoronary Artery Disease\t7\t9.203104057674327\nCough\tMyocardial Infarction\t13\t17.09147896425232\nCough\tShock, Cardiogenic\t2\t2.6294583021926647\nCough\tPericardial Effusion\t3\t3.944187453288997\nCough\tPericarditis\t6\t7.888374906577994\nCough\tPericarditis, Constrictive\t3\t3.944187453288997\nCough\tPneumopericardium\t3\t3.944187453288997\nCough\tPulmonary Heart Disease\t6\t7.888374906577994\nCough\tVentricular Dysfunction, Left\t5\t6.573645755481662\nCough\tTakotsubo Cardiomyopathy\t1\t1.3147291510963324\nCough\tVentricular Outflow Obstruction\t1\t1.3147291510963324\nCough\tVascular Diseases\t2\t2.6294583021926647\nCough\tAneurysm\t5\t6.573645755481662\nCough\tAneurysm, Dissecting\t4\t5.2589166043853295\nCough\tAneurysm, False\t5\t6.573645755481662\nCough\tAneurysm, Ruptured\t2\t2.6294583021926647\nCough\tAortic Rupture\t3\t3.944187453288997\nCough\tAortic Aneurysm\t3\t3.944187453288997\nCough\tAortic Aneurysm, Thoracic\t9\t11.83256235986699\nCough\tAngioedema\t9\t11.83256235986699\nCough\tAortic Diseases\t1\t1.3147291510963324\nCough\tAortitis\t2\t2.6294583021926647\nCough\tArterial Occlusive Diseases\t4\t5.2589166043853295\nCough\tArteriosclerosis\t1\t1.3147291510963324\nCough\tArteritis\t2\t2.6294583021926647\nCough\tDiabetic Angiopathies\t1\t1.3147291510963324\nCough\tDiabetic Foot\t1\t1.3147291510963324\nCough\tEmbolism\t3\t3.944187453288997\nCough\tEmbolism, Air\t13\t17.09147896425232\nCough\tEmbolism, Fat\t1\t1.3147291510963324\nCough\tEmbolism, Paradoxical\t2\t2.6294583021926647\nCough\tVenous Thromboembolism\t1\t1.3147291510963324\nCough\tThrombosis\t3\t3.944187453288997\nCough\tVenous Thrombosis\t1\t1.3147291510963324\nCough\tThrombophlebitis\t3\t3.944187453288997\nCough\tEhlers-Danlos Syndrome\t2\t2.6294583021926647\nCough\tHypertension\t93\t122.26981105195891\nCough\tHypotension\t7\t9.203104057674327\nCough\tSuperior Vena Cava Syndrome\t4\t5.2589166043853295\nCough\tVaricose Veins\t3\t3.944187453288997\nCough\tVasculitis\t3\t3.944187453288997\nCough\tMucocutaneous Lymph Node Syndrome\t7\t9.203104057674327\nCough\tPurpura, Schoenlein-Henoch\t1\t1.3147291510963324\nCough\tChurg-Strauss Syndrome\t3\t3.944187453288997\nCough\tVasculitis, Leukocytoclastic, Cutaneous\t2\t2.6294583021926647\nCough\tVenous Insufficiency\t2\t2.6294583021926647\nCough\tHematologic Diseases\t1\t1.3147291510963324\nCough\tAnemia\t5\t6.573645755481662\nCough\tAnemia, Aplastic\t1\t1.3147291510963324\nCough\tAnemia, Sickle Cell\t13\t17.09147896425232\nCough\tSickle Cell Trait\t1\t1.3147291510963324\nCough\tbeta-Thalassemia\t2\t2.6294583021926647\nCough\tAnemia, Pernicious\t1\t1.3147291510963324\nCough\tAnemia, Refractory\t1\t1.3147291510963324\nCough\tBlood Coagulation Disorders\t1\t1.3147291510963324\nCough\tHemophilia A\t1\t1.3147291510963324\nCough\tWiskott-Aldrich Syndrome\t1\t1.3147291510963324\nCough\tEcchymosis\t2\t2.6294583021926647\nCough\tPurpura\t3\t3.944187453288997\nCough\tThrombocytopenia\t1\t1.3147291510963324\nCough\tAgammaglobulinemia\t2\t2.6294583021926647\nCough\tIgG Deficiency\t1\t1.3147291510963324\nCough\tMyelodysplastic Syndromes\t1\t1.3147291510963324\nCough\tPolycythemia Vera\t3\t3.944187453288997\nCough\tEosinophilia\t48\t63.10699925262395\nCough\tAngiolymphoid Hyperplasia with Eosinophilia\t2\t2.6294583021926647\nCough\tHypereosinophilic Syndrome\t6\t7.888374906577994\nCough\tLeukocytosis\t3\t3.944187453288997\nCough\tLymphocytosis\t2\t2.6294583021926647\nCough\tChediak-Higashi Syndrome\t1\t1.3147291510963324\nCough\tGranulomatous Disease, Chronic\t2\t2.6294583021926647\nCough\tJobs Syndrome 1.0000000
## Mandibular Diseases 0.0000000
## Mandibular Diseases
## Lupus Nephritis 0.001865832
## Uterine Cervical Diseases 0.004929995
## Tuberculosis 0.010256138
## Silo Fillers Disease\t1\t1.3147291510963324\nCough\tAnti-Glomerular Basement Membrane Disease\t3\t3.944187453288997\nCough\tHistiocytosis, Langerhans-Cell\t10\t13.147291510963324\nCough\tIdiopathic Pulmonary Fibrosis\t29\t38.12714538179364\nCough\tPneumoconiosis\t19\t24.979853870830315\nCough\tAsbestosis\t9\t11.83256235986699\nCough\tByssinosis\t4\t5.2589166043853295\nCough\tSilicosis\t8\t10.517833208770659\nCough\tSarcoidosis, Pulmonary\t20\t26.29458302192665\nCough\tWegener Granulomatosis\t9\t11.83256235986699\nCough\tLung Diseases, Obstructive\t93\t122.26981105195891\nCough\tPulmonary Disease, Chronic Obstructive\t90\t118.3256235986699\nCough\tLung Injury\t1\t1.3147291510963324\nCough\tMeconium Aspiration Syndrome\t1\t1.3147291510963324\nCough\tBronchopulmonary Dysplasia\t2\t2.6294583021926647\nCough\tPneumonia\t95\t124.89926935415157\nCough\tPleuropneumonia\t1\t1.3147291510963324\nCough\tPneumonia, Aspiration\t35\t46.01552028837163\nCough\tPneumonia, Lipid\t5\t6.573645755481662\nCough\tPulmonary Alveolar Proteinosis\t7\t9.203104057674327\nCough\tPulmonary Atelectasis\t20\t26.29458302192665\nCough\tMiddle Lobe Syndrome\t5\t6.573645755481662\nCough\tPulmonary Edema\t21\t27.60931217302298\nCough\tPulmonary Embolism\t22\t28.92404132411931\nCough\tPulmonary Emphysema\t31\t40.756603683986306\nCough\tLung, Hyperlucent\t1\t1.3147291510963324\nCough\tPulmonary Eosinophilia\t30\t39.44187453288997\nCough\tPulmonary Fibrosis\t27\t35.49768707960097\nCough\tPulmonary Veno-Occlusive Disease\t1\t1.3147291510963324\nCough\tRespiratory Distress Syndrome, Adult\t8\t10.517833208770659\nCough\tRespiratory Distress Syndrome, Newborn\t6\t7.888374906577994\nCough\tScimitar Syndrome\t2\t2.6294583021926647\nCough\tNose Diseases\t6\t7.888374906577994\nCough\tEpistaxis\t2\t2.6294583021926647\nCough\tNasal Obstruction\t4\t5.2589166043853295\nCough\tNasal Polyps\t1\t1.3147291510963324\nCough\tParanasal Sinus Diseases\t3\t3.944187453288997\nCough\tSinusitis\t46\t60.47754095043129\nCough\tMaxillary Sinusitis\t2\t2.6294583021926647\nCough\tRhinitis\t54\t70.99537415920194\nCough\tRhinitis, Allergic, Perennial\t18\t23.66512471973398\nCough\tRhinitis, Allergic, Seasonal\t24\t31.553499626311975\nCough\tRhinitis, Atrophic\t1\t1.3147291510963324\nCough\tRhinitis, Vasomotor\t1\t1.3147291510963324\nCough\tPleural Diseases\t11\t14.462020662059656\nCough\tChylothorax\t1\t1.3147291510963324\nCough\tHydrothorax\t2\t2.6294583021926647\nCough\tPleural Effusion\t21\t27.60931217302298\nCough\tPleurisy\t9\t11.83256235986699\nCough\tPneumothorax\t23\t30.238770475215645\nCough\tRespiration Disorders\t72\t94.66049887893593\nCough\tAltitude Sickness\t5\t6.573645755481662\nCough\tApnea\t9\t11.83256235986699\nCough\tSleep Apnea Syndromes\t13\t17.09147896425232\nCough\tSleep Apnea, Central\t1\t1.3147291510963324\nCough\tSleep Apnea, Obstructive\t5\t6.573645755481662\nCough\tCough\t4598\t6045.124636740937\nCough\tDyspnea\t155\t203.78301841993152\nCough\tDyspnea, Paroxysmal\t2\t2.6294583021926647\nCough\tHyperventilation\t10\t13.147291510963324\nCough\tMouth Breathing\t2\t2.6294583021926647\nCough\tRespiratory Aspiration\t13\t17.09147896425232\nCough\tRespiratory Insufficiency\t60\t78.88374906577994\nCough\tAirway Obstruction\t70\t92.03104057674327\nCough\tHypoventilation\t2\t2.6294583021926647\nCough\tRespiratory Paralysis\t4\t5.2589166043853295\nCough\tRespiratory Hypersensitivity\t52\t68.36591585700928\nCough\tRespiratory System Abnormalities\t1\t1.3147291510963324\nCough\tBronchopulmonary Sequestration\t4\t5.2589166043853295\nCough\tRespiratory Tract Fistula\t3\t3.944187453288997\nCough\tEpiglottitis\t4\t5.2589166043853295\nCough\tTracheitis\t10\t13.147291510963324\nCough\tThoracic Diseases\t7\t9.203104057674327\nCough\tMediastinal Diseases\t8\t10.517833208770659\nCough\tMediastinal Emphysema\t20\t26.29458302192665\nCough\tMediastinitis\t1\t1.3147291510963324\nCough\tTracheal Diseases\t52\t68.36591585700928\nCough\tTracheal Stenosis\t14\t18.406208115348655\nCough\tEar Diseases\t1\t1.3147291510963324\nCough\tEarache\t2\t2.6294583021926647\nCough\tHearing Loss, Bilateral\t1\t1.3147291510963324\nCough\tHearing Loss, Functional\t1\t1.3147291510963324\nCough\tLabyrinth Diseases\t1\t1.3147291510963324\nCough\tVertigo\t1\t1.3147291510963324\nCough\tOtitis\t1\t1.3147291510963324\nCough\tOtitis Externa\t1\t1.3147291510963324\nCough\tOtitis Media\t5\t6.573645755481662\nCough\tOtitis Media with Effusion\t1\t1.3147291510963324\nCough\tMultiple Sclerosis\t6\t7.888374906577994\nCough\tMyasthenia Gravis\t1\t1.3147291510963324\nCough\tGuillain-Barre Syndrome\t2\t2.6294583021926647\nCough\tHereditary Sensory and Autonomic Neuropathies\t3\t3.944187453288997\nCough\tGiant Cell Arteritis\t26\t34.18295792850464\nCough\tAutonomic Nervous System Diseases\t4\t5.2589166043853295\nCough\tAdie Syndrome\t4\t5.2589166043853295\nCough\tHypotension, Orthostatic\t1\t1.3147291510963324\nCough\tSyncope, Vasovagal\t2\t2.6294583021926647\nCough\tCentral Nervous System Diseases\t1\t1.3147291510963324\nCough\tBrain Diseases\t3\t3.944187453288997\nCough\tParkinson Disease\t11\t14.462020662059656\nCough\tParkinson Disease, Postencephalitic\t1\t1.3147291510963324\nCough\tSupranuclear Palsy, Progressive\t1\t1.3147291510963324\nCough\tTourette Syndrome\t4\t5.2589166043853295\nCough\tCerebral Palsy\t4\t5.2589166043853295\nCough\tBrain Death\t1\t1.3147291510963324\nCough\tBrain Diseases, Metabolic, Inborn\t1\t1.3147291510963324\nCough\tGlycogen Storage Disease Type II\t2\t2.6294583021926647\nCough\tNiemann-Pick Disease, Type B\t1\t1.3147291510963324\nCough\tBrain Edema\t1\t1.3147291510963324\nCough\tBrain Injuries\t2\t2.6294583021926647\nCough\tPneumocephalus\t3\t3.944187453288997\nCough\tCerebellar Diseases\t1\t1.3147291510963324\nCough\tCerebellar Ataxia\t1\t1.3147291510963324\nCough\tAtaxia Telangiectasia\t1\t1.3147291510963324\nCough\tCerebrovascular Disorders\t7\t9.203104057674327\nCough\tBrain Ischemia\t3\t3.944187453288997\nCough\tBrain Infarction\t1\t1.3147291510963324\nCough\tBrain Stem Infarctions\t1\t1.3147291510963324\nCough\tLateral Medullary Syndrome\t1\t1.3147291510963324\nCough\tCerebral Infarction\t18\t23.66512471973398\nCough\tInfarction, Middle Cerebral Artery\t1\t1.3147291510963324\nCough\tIschemic Attack, Transient\t1\t1.3147291510963324\nCough\tCarotid Artery Diseases\t4\t5.2589166043853295\nCough\tCarotid Artery Thrombosis\t1\t1.3147291510963324\nCough\tCarotid Stenosis\t1\t1.3147291510963324\nCough\tVertebral Artery Dissection\t1\t1.3147291510963324\nCough\tIntracranial Aneurysm\t2\t2.6294583021926647\nCough\tIntracranial Arteriosclerosis\t1\t1.3147291510963324\nCough\tIntracranial Arteriovenous Malformations\t1\t1.3147291510963324\nCough\tIntracranial Embolism and Thrombosis\t2\t2.6294583021926647\nCough\tIntracranial Embolism\t3\t3.944187453288997\nCough\tCerebral Hemorrhage\t4\t5.2589166043853295\nCough\tHematoma, Epidural, Cranial\t2\t2.6294583021926647\nCough\tHematoma, Subdural\t2\t2.6294583021926647\nCough\tSubarachnoid Hemorrhage\t2\t2.6294583021926647\nCough\tStroke\t15\t19.720937266444984\nCough\tVascular Headaches\t1\t1.3147291510963324\nCough\tDementia\t1\t1.3147291510963324\nCough\tCreutzfeldt-Jakob Syndrome\t2\t2.6294583021926647\nCough\tMeningoencephalitis\t2\t2.6294583021926647\nCough\tEpilepsy\t11\t14.462020662059656\nCough\tEpilepsies, Partial\t3\t3.944187453288997\nCough\tEpilepsy, Temporal Lobe\t3\t3.944187453288997\nCough\tSeizures\t10\t13.147291510963324\nCough\tHeadache Disorders\t1\t1.3147291510963324\nCough\tHeadache Disorders, Primary\t2\t2.6294583021926647\nCough\tMigraine Disorders\t4\t5.2589166043853295\nCough\tMigraine without Aura\t1\t1.3147291510963324\nCough\tTension-Type Headache\t1\t1.3147291510963324\nCough\tCluster Headache\t2\t2.6294583021926647\nCough\tParoxysmal Hemicrania\t1\t1.3147291510963324\nCough\tHydrocephalus\t4\t5.2589166043853295\nCough\tHypoxia, Brain\t2\t2.6294583021926647\nCough\tIntracranial Hypertension\t1\t1.3147291510963324\nCough\tHypertensive Encephalopathy\t1\t1.3147291510963324\nCough\tPseudotumor Cerebri\t2\t2.6294583021926647\nCough\tIntracranial Hypotension\t2\t2.6294583021926647\nCough\tSubdural Effusion\t1\t1.3147291510963324\nCough\tMovement Disorders\t2\t2.6294583021926647\nCough\tDyskinesias\t1\t1.3147291510963324\nCough\tTorticollis\t2\t2.6294583021926647\nCough\tEssential Tremor\t1\t1.3147291510963324\nCough\tTic Disorders\t8\t10.517833208770659\nCough\tSpinal Cord Diseases\t2\t2.6294583021926647\nCough\tAmyotrophic Lateral Sclerosis\t18\t23.66512471973398\nCough\tMuscular Atrophy, Spinal\t1\t1.3147291510963324\nCough\tSpinal Muscular Atrophies of Childhood\t3\t3.944187453288997\nCough\tSpinal Cord Injuries\t18\t23.66512471973398\nCough\tSyringomyelia\t5\t6.573645755481662\nCough\tCranial Nerve Diseases\t2\t2.6294583021926647\nCough\tHypoglossal Nerve Diseases\t1\t1.3147291510963324\nCough\tNystagmus, Pathologic\t2\t2.6294583021926647\nCough\tOptic Nerve Diseases\t2\t2.6294583021926647\nCough\tOptic Neuritis\t1\t1.3147291510963324\nCough\tTrigeminal Neuralgia\t1\t1.3147291510963324\nCough\tVagus Nerve Diseases\t6\t7.888374906577994\nCough\tHereditary Sensory and Motor Neuropathy\t3\t3.944187453288997\nCough\tArnold-Chiari Malformation\t14\t18.406208115348655\nCough\tMeningocele\t1\t1.3147291510963324\nCough\tMotor Neuron Disease\t3\t3.944187453288997\nCough\tBulbar Palsy, Progressive\t2\t2.6294583021926647\nCough\tDecerebrate State\t8\t10.517833208770659\nCough\tDystonia\t1\t1.3147291510963324\nCough\tMyoclonus\t1\t1.3147291510963324\nCough\tPsychomotor Agitation\t1\t1.3147291510963324\nCough\tTics\t1\t1.3147291510963324\nCough\tLanguage Disorders\t1\t1.3147291510963324\nCough\tSpeech Disorders\t1\t1.3147291510963324\nCough\tMutism\t1\t1.3147291510963324\nCough\tConfusion\t2\t2.6294583021926647\nCough\tDelirium\t1\t1.3147291510963324\nCough\tConsciousness Disorders\t6\t7.888374906577994\nCough\tUnconsciousness\t2\t2.6294583021926647\nCough\tComa\t3\t3.944187453288997\nCough\tSyncope\t110\t144.62020662059655\nCough\tMemory Disorders\t1\t1.3147291510963324\nCough\tAmnesia\t1\t1.3147291510963324\nCough\tMental Retardation\t1\t1.3147291510963324\nCough\tDown Syndrome\t3\t3.944187453288997\nCough\tHallucinations\t2\t2.6294583021926647\nCough\tNeurogenic Inflammation\t1\t1.3147291510963324\nCough\tMuscular Atrophy\t1\t1.3147291510963324\nCough\tSpasm\t1\t1.3147291510963324\nCough\tPain\t30\t39.44187453288997\nCough\tBack Pain\t4\t5.2589166043853295\nCough\tHeadache\t43\t56.53335349714229\nCough\tNeck Pain\t1\t1.3147291510963324\nCough\tSciatica\t1\t1.3147291510963324\nCough\tParalysis\t2\t2.6294583021926647\nCough\tHemiplegia\t2\t2.6294583021926647\nCough\tParaplegia\t4\t5.2589166043853295\nCough\tQuadriplegia\t14\t18.406208115348655\nCough\tTonic Pupil\t2\t2.6294583021926647\nCough\tSensation Disorders\t1\t1.3147291510963324\nCough\tDizziness\t3\t3.944187453288997\nCough\tOlfaction Disorders\t1\t1.3147291510963324\nCough\tParesthesia\t1\t1.3147291510963324\nCough\tDysgeusia\t1\t1.3147291510963324\nCough\tVision Disorders\t1\t1.3147291510963324\nCough\tBlindness\t4\t5.2589166043853295\nCough\tNeuromuscular Diseases\t36\t47.33024943946796\nCough\tPeripheral Nervous System Diseases\t4\t5.2589166043853295\nCough\tDiabetic Neuropathies\t7\t9.203104057674327\nCough\tMononeuropathies\t1\t1.3147291510963324\nCough\tNerve Compression Syndromes\t4\t5.2589166043853295\nCough\tThoracic Outlet Syndrome\t1\t1.3147291510963324\nCough\tNeuritis\t1\t1.3147291510963324\nCough\tPOEMS Syndrome\t1\t1.3147291510963324\nCough\tNeurotoxicity Syndromes\t1\t1.3147291510963324\nCough\tArsenic Poisoning\t2\t2.6294583021926647\nCough\tSleep Disorders\t7\t9.203104057674327\nCough\tSleep Initiation and Maintenance Disorders\t4\t5.2589166043853295\nCough\tCraniocerebral Trauma\t4\t5.2589166043853295\nCough\tShaken Baby Syndrome\t1\t1.3147291510963324\nCough\tSkull Fractures\t1\t1.3147291510963324\nCough\tConjunctival Diseases\t1\t1.3147291510963324\nCough\tConjunctivitis\t4\t5.2589166043853295\nCough\tConjunctivitis, Allergic\t1\t1.3147291510963324\nCough\tKeratitis\t1\t1.3147291510963324\nCough\tChoroid Hemorrhage\t1\t1.3147291510963324\nCough\tRetinal Hemorrhage\t3\t3.944187453288997\nCough\tEyelid Diseases\t1\t1.3147291510963324\nCough\tBlepharoptosis\t1\t1.3147291510963324\nCough\tLacrimal Apparatus Diseases\t2\t2.6294583021926647\nCough\tGlaucoma\t3\t3.944187453288997\nCough\tGlaucoma, Open-Angle\t1\t1.3147291510963324\nCough\tOcular Hypotension\t1\t1.3147291510963324\nCough\tOrbital Diseases\t3\t3.944187453288997\nCough\tExophthalmos\t2\t2.6294583021926647\nCough\tMyopia\t1\t1.3147291510963324\nCough\tDiabetic Retinopathy\t1\t1.3147291510963324\nCough\tIris Diseases\t1\t1.3147291510963324\nCough\tGenital Diseases, Male\t1\t1.3147291510963324\nCough\tHemospermia\t1\t1.3147291510963324\nCough\tProstatic Hyperplasia\t2\t2.6294583021926647\nCough\tUrologic Diseases\t1\t1.3147291510963324\nCough\tKidney Diseases\t2\t2.6294583021926647\nCough\tDiabetes Insipidus\t1\t1.3147291510963324\nCough\tDiabetes Insipidus, Neurogenic\t1\t1.3147291510963324\nCough\tDiabetic Nephropathies\t1\t1.3147291510963324\nCough\tGlomerulonephritis\t2\t2.6294583021926647\nCough\tGlomerulonephritis, Membranoproliferative\t1\t1.3147291510963324\nCough\tNephrotic Syndrome\t2\t2.6294583021926647\nCough\tRenal Artery Obstruction\t1\t1.3147291510963324\nCough\tRenal Insufficiency\t1\t1.3147291510963324\nCough\tAcute Kidney Injury\t4\t5.2589166043853295\nCough\tKidney Failure, Chronic\t6\t7.888374906577994\nCough\tUrethral Diseases\t1\t1.3147291510963324\nCough\tUrinary Bladder Neck Obstruction\t1\t1.3147291510963324\nCough\tUrinary Bladder, Overactive\t2\t2.6294583021926647\nCough\tUrination Disorders\t6\t7.888374906577994\nCough\tHematuria\t1\t1.3147291510963324\nCough\tOliguria\t1\t1.3147291510963324\nCough\tAlbuminuria\t2\t2.6294583021926647\nCough\tUrinary Incontinence\t28\t36.81241623069731\nCough\tUrinary Incontinence, Stress\t99\t130.1581859585369\nCough\tUrinary Incontinence, Urge\t1\t1.3147291510963324\nCough\tFemale Urogenital Diseases\t1\t1.3147291510963324\nCough\tFallopian Tube Diseases\t1\t1.3147291510963324\nCough\tAnovulation\t1\t1.3147291510963324\nCough\tOvarian Hyperstimulation Syndrome\t1\t1.3147291510963324\nCough\tEndometriosis\t4\t5.2589166043853295\nCough\tInfertility, Female\t1\t1.3147291510963324\nCough\tUterine Cervical Incompetence\t1\t1.3147291510963324\nCough\tUterine Prolapse\t4\t5.2589166043853295\nCough\tVaginal Diseases\t2\t2.6294583021926647\nCough\tPregnancy Complications\t5\t6.573645755481662\nCough\tAbruptio Placentae\t1\t1.3147291510963324\nCough\tFetal Membranes, Premature Rupture\t1\t1.3147291510963324\nCough\tPregnancy Complications, Cardiovascular\t1\t1.3147291510963324\nCough\tPregnancy in Diabetics\t1\t1.3147291510963324\nCough\tPuerperal Disorders\t3\t3.944187453288997\nCough\tCardiovascular Abnormalities\t2\t2.6294583021926647\nCough\tHeart Defects, Congenital\t1\t1.3147291510963324\nCough\tCoronary Vessel Anomalies\t1\t1.3147291510963324\nCough\tHeart Septal Defects\t1\t1.3147291510963324\nCough\tHeart Septal Defects, Atrial\t11\t14.462020662059656\nCough\tHeart Septal Defects, Ventricular\t1\t1.3147291510963324\nCough\tTetralogy of Fallot\t1\t1.3147291510963324\nCough\tTransposition of Great Vessels\t1\t1.3147291510963324\nCough\tVascular Malformations\t1\t1.3147291510963324\nCough\tArteriovenous Malformations\t2\t2.6294583021926647\nCough\tVascular Fistula\t1\t1.3147291510963324\nCough\tArterio-Arterial Fistula\t1\t1.3147291510963324\nCough\tHeart Diseases\t11\t14.462020662059656\nCough\tArrhythmias, Cardiac\t15\t19.720937266444984\nCough\tSick Sinus Syndrome\t1\t1.3147291510963324\nCough\tAtrial Fibrillation\t3\t3.944187453288997\nCough\tBradycardia\t1\t1.3147291510963324\nCough\tAtrial Premature Complexes\t3\t3.944187453288997\nCough\tVentricular Premature Complexes\t4\t5.2589166043853295\nCough\tHeart Block\t8\t10.517833208770659\nCough\tAtrioventricular Block\t3\t3.944187453288997\nCough\tLong QT Syndrome\t2\t2.6294583021926647\nCough\tTachycardia\t8\t10.517833208770659\nCough\tTachycardia, Paroxysmal\t1\t1.3147291510963324\nCough\tTachycardia, Supraventricular\t2\t2.6294583021926647\nCough\tTachycardia, Ectopic Atrial\t1\t1.3147291510963324\nCough\tTachycardia, Ventricular\t2\t2.6294583021926647\nCough\tTorsades de Pointes\t1\t1.3147291510963324\nCough\tVentricular Fibrillation\t11\t14.462020662059656\nCough\tCardiac Output, Low\t3\t3.944187453288997\nCough\tCardiac Tamponade\t1\t1.3147291510963324\nCough\tCardiomegaly\t1\t1.3147291510963324\nCough\tHypertrophy, Left Ventricular\t2\t2.6294583021926647\nCough\tHypertrophy, Right Ventricular\t1\t1.3147291510963324\nCough\tCardiomyopathies\t4\t5.2589166043853295\nCough\tCardiomyopathy, Hypertrophic\t2\t2.6294583021926647\nCough\tCardiomyopathy, Restrictive\t1\t1.3147291510963324\nCough\tMyocardial Reperfusion Injury\t1\t1.3147291510963324\nCough\tMyocarditis\t4\t5.2589166043853295\nCough\tHeart Arrest\t11\t14.462020662059656\nCough\tHeart Failure\t31\t40.756603683986306\nCough\tAortic Valve Insufficiency\t2\t2.6294583021926647\nCough\tMitral Valve Prolapse\t1\t1.3147291510963324\nCough\tMitral Valve Insufficiency\t1\t1.3147291510963324\nCough\tMitral Valve Stenosis\t4\t5.2589166043853295\nCough\tTricuspid Valve Stenosis\t1\t1.3147291510963324\nCough\tMyocardial Ischemia\t2\t2.6294583021926647\nCough\tAngina Pectoris\t2\t2.6294583021926647\nCough\tAngina, Unstable\t1\t1.3147291510963324\nCough\tCoronary Disease\t7\t9.203104057674327\nCough\tCoronary Artery Disease\t7\t9.203104057674327\nCough\tMyocardial Infarction\t13\t17.09147896425232\nCough\tShock, Cardiogenic\t2\t2.6294583021926647\nCough\tPericardial Effusion\t3\t3.944187453288997\nCough\tPericarditis\t6\t7.888374906577994\nCough\tPericarditis, Constrictive\t3\t3.944187453288997\nCough\tPneumopericardium\t3\t3.944187453288997\nCough\tPulmonary Heart Disease\t6\t7.888374906577994\nCough\tVentricular Dysfunction, Left\t5\t6.573645755481662\nCough\tTakotsubo Cardiomyopathy\t1\t1.3147291510963324\nCough\tVentricular Outflow Obstruction\t1\t1.3147291510963324\nCough\tVascular Diseases\t2\t2.6294583021926647\nCough\tAneurysm\t5\t6.573645755481662\nCough\tAneurysm, Dissecting\t4\t5.2589166043853295\nCough\tAneurysm, False\t5\t6.573645755481662\nCough\tAneurysm, Ruptured\t2\t2.6294583021926647\nCough\tAortic Rupture\t3\t3.944187453288997\nCough\tAortic Aneurysm\t3\t3.944187453288997\nCough\tAortic Aneurysm, Thoracic\t9\t11.83256235986699\nCough\tAngioedema\t9\t11.83256235986699\nCough\tAortic Diseases\t1\t1.3147291510963324\nCough\tAortitis\t2\t2.6294583021926647\nCough\tArterial Occlusive Diseases\t4\t5.2589166043853295\nCough\tArteriosclerosis\t1\t1.3147291510963324\nCough\tArteritis\t2\t2.6294583021926647\nCough\tDiabetic Angiopathies\t1\t1.3147291510963324\nCough\tDiabetic Foot\t1\t1.3147291510963324\nCough\tEmbolism\t3\t3.944187453288997\nCough\tEmbolism, Air\t13\t17.09147896425232\nCough\tEmbolism, Fat\t1\t1.3147291510963324\nCough\tEmbolism, Paradoxical\t2\t2.6294583021926647\nCough\tVenous Thromboembolism\t1\t1.3147291510963324\nCough\tThrombosis\t3\t3.944187453288997\nCough\tVenous Thrombosis\t1\t1.3147291510963324\nCough\tThrombophlebitis\t3\t3.944187453288997\nCough\tEhlers-Danlos Syndrome\t2\t2.6294583021926647\nCough\tHypertension\t93\t122.26981105195891\nCough\tHypotension\t7\t9.203104057674327\nCough\tSuperior Vena Cava Syndrome\t4\t5.2589166043853295\nCough\tVaricose Veins\t3\t3.944187453288997\nCough\tVasculitis\t3\t3.944187453288997\nCough\tMucocutaneous Lymph Node Syndrome\t7\t9.203104057674327\nCough\tPurpura, Schoenlein-Henoch\t1\t1.3147291510963324\nCough\tChurg-Strauss Syndrome\t3\t3.944187453288997\nCough\tVasculitis, Leukocytoclastic, Cutaneous\t2\t2.6294583021926647\nCough\tVenous Insufficiency\t2\t2.6294583021926647\nCough\tHematologic Diseases\t1\t1.3147291510963324\nCough\tAnemia\t5\t6.573645755481662\nCough\tAnemia, Aplastic\t1\t1.3147291510963324\nCough\tAnemia, Sickle Cell\t13\t17.09147896425232\nCough\tSickle Cell Trait\t1\t1.3147291510963324\nCough\tbeta-Thalassemia\t2\t2.6294583021926647\nCough\tAnemia, Pernicious\t1\t1.3147291510963324\nCough\tAnemia, Refractory\t1\t1.3147291510963324\nCough\tBlood Coagulation Disorders\t1\t1.3147291510963324\nCough\tHemophilia A\t1\t1.3147291510963324\nCough\tWiskott-Aldrich Syndrome\t1\t1.3147291510963324\nCough\tEcchymosis\t2\t2.6294583021926647\nCough\tPurpura\t3\t3.944187453288997\nCough\tThrombocytopenia\t1\t1.3147291510963324\nCough\tAgammaglobulinemia\t2\t2.6294583021926647\nCough\tIgG Deficiency\t1\t1.3147291510963324\nCough\tMyelodysplastic Syndromes\t1\t1.3147291510963324\nCough\tPolycythemia Vera\t3\t3.944187453288997\nCough\tEosinophilia\t48\t63.10699925262395\nCough\tAngiolymphoid Hyperplasia with Eosinophilia\t2\t2.6294583021926647\nCough\tHypereosinophilic Syndrome\t6\t7.888374906577994\nCough\tLeukocytosis\t3\t3.944187453288997\nCough\tLymphocytosis\t2\t2.6294583021926647\nCough\tChediak-Higashi Syndrome\t1\t1.3147291510963324\nCough\tGranulomatous Disease, Chronic\t2\t2.6294583021926647\nCough\tJobs Syndrome 0.000000000
## Mandibular Diseases 1.000000000
BOG [4] is a method for disease similarity calculating only using disease-gene associations. We designed function BOG to implement this method. And for the purpose of normalizing the matrix produced by method BOG, we implemented function Normalize. For example:
data(d2g_separation) #get disease-gene associations
ds<-sample(names(d2g_separation),5)
ds
## [1] "joint diseases" "insulin resistance"
## [3] "connective tissue diseases" "retinal dystrophies"
## [5] "anemia"
sim<-BOG(ds,ds,d2g_separation)
Normalize(sim) #normalize BOG sim scores
## joint diseases insulin resistance
## joint diseases 0.7899751 0
## insulin resistance 0.0000000 1
## connective tissue diseases 0.1174956 0
## retinal dystrophies 0.0000000 0
## anemia 0.0000000 0
## connective tissue diseases retinal dystrophies
## joint diseases 0.117495563 0.0000000
## insulin resistance 0.000000000 0.0000000
## connective tissue diseases 0.632504738 0.0000000
## retinal dystrophies 0.000000000 0.8837116
## anemia 0.001490542 0.0000000
## anemia
## joint diseases 0.000000000
## insulin resistance 0.000000000
## connective tissue diseases 0.001490542
## retinal dystrophies 0.000000000
## anemia 0.928517902
Note that disease-gene associations d2g_separation is a list object that can be obtained by function x2y_df2list. Function x2y_df2list take a data.frame which has two columns (one column contains disease ids and one column contains gene ids, each row declares an association between a disease and a gene) as a input. See an example below:
options(stringsAsFactors = FALSE) #this may be neccessary
d2g_fundo_sample<-read.table(text = "DOID:5218 IL6
DOID:8649 EGFR
DOID:8649 PTGS2
DOID:8649 VHL
DOID:8649 ERBB2
DOID:8649 PDCD1
DOID:8649 KLRC1
DOID:5214 MPZ
DOID:5214 EGR2
DOID:5210 AMH")
d2g_fundo_list<-x2y_df2list(d2g_fundo_sample)
d2g_fundo_list
## $`DOID:5218`
## [1] "IL6"
##
## $`DOID:8649`
## [1] "EGFR" "PTGS2" "VHL" "ERBB2" "PDCD1" "KLRC1"
##
## $`DOID:5214`
## [1] "MPZ" "EGR2"
##
## $`DOID:5210`
## [1] "AMH"
Function Normalize normalize a matrix or a vector as the following formula: \[NormScore=\frac{OrigScore-MinScore}{MaxScore-MinScore}\]
Here’s an example:
m<-matrix(1:9,3,3)
m
## [,1] [,2] [,3]
## [1,] 1 4 7
## [2,] 2 5 8
## [3,] 3 6 9
Normalize(m)
## [,1] [,2] [,3]
## [1,] 0.000 0.375 0.750
## [2,] 0.125 0.500 0.875
## [3,] 0.250 0.625 1.000
PSB [5] uses not only disease-gene associations but also GO-gene associations. We designed function PSB to implement this method. Function PSB needs disease-GO associations which can be obtained by function HypergeometricTest.
Here’s an example for PSB:
## get the data
data(go2g_sample)
data(d2go_sample)
ds<-names(d2go_sample)
sim<-PSB(ds,ds,d2go_sample,go2g_sample)
sim
## DOID:5652 DOID:10005 DOID:2290
## DOID:5652 4.1743210 0.44099253 0.51055413
## DOID:10005 0.4409925 5.82708131 0.09897865
## DOID:2290 0.5105541 0.09897865 5.45446576
Normalize(sim)
## DOID:5652 DOID:10005 DOID:2290
## DOID:5652 0.71146461 0.05970806 0.07185197
## DOID:10005 0.05970806 1.00000000 0.00000000
## DOID:2290 0.07185197 0.00000000 0.93494957
FunSim [3] is a method that takes advantage of gene function network data from HumanNet [6]. First we got the raw data from HumanNet, then we normalized the associated log likelihood score of gene pairs. Then we can use function FunSim to mearsure similarity between diseases (note that we use function LLSn2List to convert HumanNet data from data.frame to list, for more efficient calculating):
## in this method, we must use disease-gene associations
## which genes are represented by entrez ids because of
## HumanNet
data(d2g_fundo_entrezid) ##get disease-gene associations
data(HumanNet_sample)
## we specified 5 DOIDs to match Human_sample
ds<-c("DOID:8176","DOID:2394","DOID:3744","DOID:8466","DOID:5679")
llsnlist<-LLSn2List(HumanNet_sample)
FunSim(ds,ds,d2g_fundo_entrezid,llsnlist)
## DOID:8176 DOID:2394 DOID:3744 DOID:8466 DOID:5679
## DOID:8176 1.0000000000 0.43350044 0.4476822789 0.0002666029 0.1457867
## DOID:2394 0.4335004444 1.00000000 0.4222353572 0.0166884115 0.1592188
## DOID:3744 0.4476822789 0.42223536 1.0000000000 0.0001286379 0.1293250
## DOID:8466 0.0002666029 0.01668841 0.0001286379 1.0000000000 0.1349979
## DOID:5679 0.1457866621 0.15921884 0.1293250308 0.1349979009 1.0000000
ICod [7] mearsures disease-disease similarities based on disease-related PPIs. We used an R graph igraph to import PPI data into R. For example:
## get disease-gene associations and HPRD PPI data
data(d2g_fundo_symbol)
data(PPI_HPRD)
graph_hprd<-graph.data.frame(PPI_HPRD,directed=FALSE) #get a igraph object based on HPRD PPI data
ds<-sample(names(d2g_fundo_symbol),5)
ICod(ds,ds,d2g_fundo_symbol,graph_hprd)
## DOID:13359 DOID:10130 DOID:630 DOID:2528 DOID:10629
## DOID:13359 1.000000000 0.000000000 0.013605394 0.004129557 0.000000000
## DOID:10130 0.000000000 1.000000000 0.006250387 0.010174617 0.000000000
## DOID:630 0.013605394 0.006250387 1.000000000 0.005786591 0.004238441
## DOID:2528 0.004129557 0.010174617 0.005786591 1.000000000 0.000000000
## DOID:10629 0.000000000 0.000000000 0.004238441 0.000000000 1.000000000
Sun [8] proposed three measures which use different biological information. These three measures are: annotation-baesd, function-based and topological-based.
Sun’s annotation-based measure used the information of disease-gene association data. We implemented function Sun_annotation to calculate disease-disease similarity:
data(d2g_separation) ## get disease-gene associations
ds<-sample(names(d2g_separation),5)
Sun_annotation(ds,ds,d2g_separation)
## mitochondrial diseases
## mitochondrial diseases 1.00000000
## leukemia, lymphocytic, chronic, b-cell 0.00000000
## lymphatic diseases 0.00000000
## intellectual disability 0.01265823
## central nervous system diseases 0.05183585
## leukemia, lymphocytic, chronic, b-cell
## mitochondrial diseases 0.000000000
## leukemia, lymphocytic, chronic, b-cell 1.000000000
## lymphatic diseases 0.154929577
## intellectual disability 0.008196721
## central nervous system diseases 0.004464286
## lymphatic diseases
## mitochondrial diseases 0.000000000
## leukemia, lymphocytic, chronic, b-cell 0.154929577
## lymphatic diseases 1.000000000
## intellectual disability 0.004132231
## central nervous system diseases 0.014234875
## intellectual disability
## mitochondrial diseases 0.012658228
## leukemia, lymphocytic, chronic, b-cell 0.008196721
## lymphatic diseases 0.004132231
## intellectual disability 1.000000000
## central nervous system diseases 0.017307692
## central nervous system diseases
## mitochondrial diseases 0.051835853
## leukemia, lymphocytic, chronic, b-cell 0.004464286
## lymphatic diseases 0.014234875
## intellectual disability 0.017307692
## central nervous system diseases 1.000000000
Sun’s function-based measure uses both GO term annotations and disease-gene associations to estimate the disease similarity scores. We implemented function Sun_function to perform this method like follows:
## get a sample of disease-GO associations
data(d2go_sample)
ds<-names(d2go_sample)
Sun_function(ds,ds,d2go_sample)
## DOID:5652 DOID:10005 DOID:2290
## DOID:5652 1.00000000 0 0.02672606
## DOID:10005 0.00000000 1 0.00000000
## DOID:2290 0.02672606 0 1.00000000
Sun’s topology-based measure takes advantage of the topology of PPI network and disease-gene association data to measure disease similarity scores. Futhurmore Function Sun_topology was implemented for this method. And in this method, the graphlet signature of nodes in PPI were calculated by a tool orca [9] (see details in [8]).
Here is an example:
data(d2g_fundo_symbol)
data(graphlet_sig_hprd) #get graphlet signatures of genes in HPRD PPI network
data(weight)
ds<-sample(names(d2g_fundo_symbol),5)
Sun_topology(ds,ds,d2g_fundo_symbol,graphlet_sig_hprd,weight)
## DOID:8580 DOID:10530 DOID:2141 DOID:3005 DOID:769
## DOID:8580 1.0000000 0.3762668 0.3971859 0.4465814 0.4455113
## DOID:10530 0.3762668 1.0000000 0.4078183 0.4120618 0.4619584
## DOID:2141 0.3971859 0.4078183 1.0000000 0.3790711 0.5000000
## DOID:3005 0.4465814 0.4120618 0.3790711 1.0000000 0.5000000
## DOID:769 0.4455113 0.4619584 0.5000000 0.5000000 1.0000000
Method Separation is actually a method measuring a netowrk-based separation of disease pairs [10]. But the result can also be turned into similarity scores. And we implemented function Separation2Similarity for this purpose as the following formula: \[SimScore=\frac{MaxSepScore-SepScore}{MaxSepScore-MinSepScore}\]
Here is an example:
## get the disease-gene association data and interactome data
data(d2g_separation)
data(interactome)
## import ppi data to R by igraph
graph_interactome<-graph.data.frame(interactome,directed=FALSE)
## calculate separation of 5 sample diseases
ds<-sample(names(d2g_separation),5)
sep<-Separation(ds,ds,d2g_separation,graph_interactome)
## convert separation into simialrity
sim<-Separation2Similarity(sep)
sim
## arrhythmias, cardiac urogenital neoplasms
## arrhythmias, cardiac 0.98758776 0.05742388
## urogenital neoplasms 0.05742388 0.88305820
## respiratory hypersensitivity 0.09025555 0.14995582
## body weight 0.09618215 0.03241419
## cardiomyopathy, dilated 0.16559761 0.07113121
## respiratory hypersensitivity body weight
## arrhythmias, cardiac 0.09025555 0.096182154
## urogenital neoplasms 0.14995582 0.032414186
## respiratory hypersensitivity 1.00000000 0.000000000
## body weight 0.00000000 0.971356361
## cardiomyopathy, dilated 0.04397615 0.006761813
## cardiomyopathy, dilated
## arrhythmias, cardiac 0.165597614
## urogenital neoplasms 0.071131207
## respiratory hypersensitivity 0.043976151
## body weight 0.006761813
## cardiomyopathy, dilated 0.833076722
Disease-gene associations are the most widely used information to measure disease similarity in function-based methods. Here we provide function plot_bipartite for users to observe associations between diseases and genes more intuitively. This function can also visualize other associations like disease-GO term associations. Here’s an example:
data(d2g_fundo_symbol)
d2g_sample<-d2g_fundo_symbol[1:10]
plot_bipartite(d2g_sample)
For two specific diseases, we implemented function plot_topo to visualize the topological relationship of the two diseases’ gene sets in gene network. The following is an example:
data("PPI_HPRD")
g<-graph.data.frame(PPI_HPRD,directed = FALSE) #get an igraph graph
data(d2g_fundo_symbol)
a<-d2g_fundo_symbol[["DOID:8242"]] # get gene set a
b<-d2g_fundo_symbol[["DOID:4914"]] # get gene set b
plot_topo(a,b,g)
We implemented two functions plot_heatmap and plot_net for the disease similarity network’s visualization. Function plot_heatmap is a reuse of function simplot in package DOSE [11] which shows the heatmap of disease similarity network. Given a cutoff, function plot_net will show the relationships among diseases in a graph. For example:
data(d2g_separation)
data(interactome)
graph_interactome<-graph.data.frame(interactome,directed=FALSE)
ds<-c("myocardial ischemia","myocardial infarction","coronary artery disease",
"cerebrovascular disorders","arthritis, rheumatoid","diabetes mellitus, type 1",
"autoimmune diseases of the nervous system","demyelinating autoimmune diseases, cns",
"respiratory hypersensitivity","asthma","retinitis pigmentosa",
"retinal degeneration","macular degeneration")
sep<-Separation(ds,ds,d2g_separation,graph_interactome)
sim<-Separation2Similarity(sep)
plot_heatmap(sim,font.size = 3)
plot_net(sim,cutoff=0.2)
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