Identification of cancer cell lines based on their weighted mutational/ variational fingerprint


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Documentation for package ‘Uniquorn’ version 1.2.0

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add_custom_vcf_to_database Adds a custom vcf file to the three existing cancer cell line panels
create_bed_file create_bed_file
identify_vcf_file identify_VCF_file
initiate_canonical_databases initiate_canonical_databases
initiate_db_and_load_data initiate_db_and_load_data
parse_ccle_genotype_data parse_ccle_genotype_data
parse_cosmic_genotype_data parse_cosmic_genotype_data
parse_vcf_file parse_vcf_file
remove_custom_vcf_from_database Removes a cancer cell line training fingerprint (vcf file) from the database. The names of all training sets can be seen by using the function 'show_contained_cls'.
re_calculate_cl_weights Re-calculate sim_list_weights
show_contained_cls show_contained_cls
show_contained_mutations show_contained_mutations
show_contained_mutations_for_cl show_contained_mutations_for_cl
show_which_cls_contain_mutation show_which_cls_contain_mutation
split_add split_add
write_data_to_db write_data_to_db