REDseq-package | REDseq |
assignSeq2REsite | Assign mapped sequence tags to corresponding restriction enzyme (RE) cut sites |
binom.test.REDseq | Binomial test for REDseq dataset |
buildREmap | Build a genome wide cut site map for a Restriction Enzyme (RE) |
compareREDseq | Compare two RED Sequencing Dataset |
distanceHistSeq2RE | Plot the distance distribution from sequence to the associated RE sites |
example.assignedREDseq | an example assigned REDseq dataset |
example.map | an example REmap dataset |
example.REDseq | an example sequencing dataset from a restoration enzyme digestion (RED) experiment |
plotCutDistribution | plot cut frequencies of RE sites along a given chromosome |
REDseq | REDseq |
summarizeByRE | Output count/weight summary by restriction enzyme cut site ID (REid) |
summarizeBySeq | Output count/weight summary by sequences |