Adaptive Signature Selection and InteGratioN (ASSIGN)


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Documentation for package ‘ASSIGN’ version 1.10.0

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assign.convergence Check the convergence of the MCMC chain
assign.cv.output Cross validation output
assign.mcmc The Gibbs sampling algorithm to approximate the joint distribution of the model parameters
assign.output Prediction/validation output for test data
assign.preprocess Input data preprocessing
assign.summary Summary of the model parameters estimated by the Gibbs sampling algorithm
assign.wrapper ASSIGN All-in-one function
geneList1 Pathway signature gene sets
testData1 Gene expression profiling from cancer patients (test dataset)
trainingData1 Gene expression profiling from cell line preturbation experiments (training dataset)