To install this package, start R and enter:

## try http:// if https:// URLs are not supported
source("https://bioconductor.org/biocLite.R")
biocLite("sevenbridges")

In most cases, you don't need to download the package archive at all.

sevenbridges

This package is for version 3.3 of Bioconductor; for the stable, up-to-date release version, see sevenbridges.

R Client for Seven Bridges Platform API and CWL Tool builder in R

Bioconductor version: 3.3

R client and utilities for Seven Bridges platform API, from cancer genomics cloud to other Seven Bridges supported platforms.

Author: Tengfei Yin <tengfei.yin at sbgenomics.com>, Dusan Randjelovic <dusan.randjelovic at sbgenomics.com>, Nan Xiao <road2stat at gmail.com>

Maintainer: Tengfei Yin <tengfei.yin at sbgenomics.com>

Citation (from within R, enter citation("sevenbridges")):

To install this package, start R and enter:

## try http:// if https:// URLs are not supported
source("https://bioconductor.org/biocLite.R")
biocLite("sevenbridges")

HTML	R Script	Complete Guide for API R Client
HTML	R Script	Creating Your Docker Container and Command Line Interface (with docopt)
HTML	R Script	Describe CWL Tools/Workflows and Execution
HTML	R Script	Find Data on CGC via Data Exploerer, SPARQL and Data API
HTML	R Script	IDE container: Rstudio and Shiny server and more
HTML	R Script	Master Tutorial: use R for Cancer Genomics Cloud
PDF		Reference Manual
Text		NEWS

biocViews	DataImport, Software, ThirdPartyClient
Version	1.2.8
In Bioconductor since	BioC 3.3 (R-3.3) (< 6 months)
License	Apache License 2.0
Depends	methods, utils, stats
Imports	httr, jsonlite, yaml, objectProperties, stringr, S4Vectors, docopt, curl, liftr, rstudioapi, uuid, dplyr
LinkingTo
Suggests	BiocStyle, knitr, rmarkdown, testthat, readr, clipr
SystemRequirements
Enhances
URL	https://www.sevenbridges.com
BugReports	https://github.com/sbg/sevenbridges-r/issues
Depends On Me
Imports Me
Suggests Me
Build Report

Follow Installation instructions to use this package in your R session.

Package Source	sevenbridges_1.2.8.tar.gz
Windows Binary	sevenbridges_1.1.17.zip
Mac OS X 10.9 (Mavericks)	sevenbridges_1.2.8.tgz
Subversion source	(username/password: readonly)
Git source	https://github.com/Bioconductor-mirror/sevenbridges/tree/release-3.3
Package Short Url	http://bioconductor.org/packages/sevenbridges/
Package Downloads Report	Download Stats

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