switchBox-package | A package to train and apply K-Top-Scoring-Pair (KTSP) classifiers. |
KTSP.Classify | Function to classify samples using a KTSP classifier. |
KTSP.Train | Funtion for training the K-TSP classifier. |
matTesting | Gene expression matrix for test set data |
matTraining | Gene expression matrix for training set data |
SWAP.CalculateSignedScore | Function to calculate the pair-wise scores. |
SWAP.Filter.Wilcoxon | Statistical feature filtering based on Wilcoxon test on the ranks of expressions. |
SWAP.KTSP.Classify | Function to classify samples using a KTSP classifier. |
SWAP.KTSP.Statistics | Function computing TSP votes (comparisons) and combine their votes. The default is the kTSP statistics, sum of the votes. |
SWAP.KTSP.Train | Function for training the K-TSP classifier. |
switchBox | A package to train and apply K-Top-Scoring-Pair (KTSP) classifiers. |
testingGroup | Testing set phenotypes |
trainingGroup | Training set phenotypes |