Package: regionReport
Type: Package
Title: Generate HTML or PDF reports for a set of genomic regions or
        DESeq2/edgeR results
Version: 1.6.5
Date: 2016-05-12
Authors@R: c(person("Leonardo", "Collado-Torres", role = c("aut", "cre"), email
    = "lcollado@jhu.edu"), person(c("Andrew", "E."), "Jaffe", role = "aut",
    email = "andrew.jaffe@libd.org"), person(c("Jeffrey", "T."), "Leek",
    role = c("aut", "ths"), email = "jtleek@gmail.com"))
Description: Generate HTML or PDF reports to explore a set of regions such as
    the results from annotation-agnostic expression analysis of RNA-seq data at
    base-pair resolution performed by derfinder. You can also create reports for
    DESeq2 or edgeR results.
License: Artistic-2.0
LazyData: true
URL: https://github.com/leekgroup/regionReport
BugReports: https://github.com/leekgroup/regionReport/issues
VignetteBuilder: knitr
biocViews: DifferentialExpression, Sequencing, RNASeq, Software,
        Visualization, Transcription, Coverage, ReportWriting,
        DifferentialMethylation, DifferentialPeakCalling
Depends: R(>= 3.2)
Imports: derfinder (>= 1.1.0), DEFormats, DESeq2, GenomeInfoDb,
        GenomicRanges, knitcitations (>= 1.0.1), knitr (>= 1.6),
        knitrBootstrap (>= 0.9.0), RefManageR, rmarkdown (>= 0.9.5),
        S4Vectors, SummarizedExperiment
Suggests: BiocStyle, biovizBase, bumphunter (>= 1.7.6), Cairo,
        derfinderPlot (>= 1.3.2), devtools (>= 1.6), DT, DESeq, edgeR,
        ggbio (>= 1.13.13), ggplot2, grid, gridExtra, IRanges, mgcv,
        pasilla, pheatmap, RColorBrewer,
        TxDb.Hsapiens.UCSC.hg19.knownGene, whisker
RoxygenNote: 5.0.1
NeedsCompilation: no
Packaged: 2016-05-16 04:39:10 UTC; biocbuild
Author: Leonardo Collado-Torres [aut, cre],
  Andrew E. Jaffe [aut],
  Jeffrey T. Leek [aut, ths]
Maintainer: Leonardo Collado-Torres <lcollado@jhu.edu>
Built: R 3.3.0; ; 2016-05-16 15:30:36 UTC; unix
