Package: erccdashboard
Type: Package
Title: Assess Differential Gene Expression Experiments with ERCC
        Controls
Version: 1.6.0
Author: Sarah Munro, Steve Lund
Maintainer: Sarah Munro <sarah.munro@nist.gov>
Description: Technical performance metrics for differential gene expression experiments using External RNA Controls Consortium (ERCC) spike-in ratio mixtures.
URL: http://www.nist.gov/mml/bbd/erccdashboard.cfm,
        https://github.com/usnistgov/erccdashboard,
        http://tinyurl.com/erccsrm
BugReports: https://github.com/usnistgov/erccdashboard/issues
Depends: R (>= 3.1), ggplot2 (>= 1.0.1), gridExtra (>= 2.0.0)
Imports: edgeR, gplots, grid, gtools, limma, locfit, MASS, plyr,
        QuasiSeq, qvalue, reshape2, ROCR, scales, stringr
License: GPL (>=2)
Collate: runDashboard.R initDat.R dashboardFile.R plotAdjust.R
        loadERCCInfo.R loadExpMeas.R getDesignMat.R normalizeDat.R
        prepERCCDat.R est_r_m.R dynRangePlot.R geneExprTest.R
        testDECount.R testDEArray.R erccROC.R estLODR.R printLODRres.R
        saveERCCPlots.R maSignal.R annotLODR.R
biocViews: GeneExpression, Transcription, AlternativeSplicing,
        DifferentialExpression, DifferentialSplicing, Genetics,
        Microarray, mRNAMicroarray, RNASeq, BatchEffect,
        MultipleComparison, QualityControl
LazyData: yes
Roxygen: list(wrap = FALSE)
Packaged: 2016-05-04 04:32:05 UTC; biocbuild
NeedsCompilation: no
Built: R 3.3.0; ; 2016-05-04 14:37:28 UTC; unix
