Package: diffloop
Type: Package
Title: Differential DNA loop calling from ChIA-PET data
Version: 1.0.2
Date: 2016-04-30
Authors@R: c(
    person("Caleb", "Lareau", email = "caleblareau@g.harvard.edu", role = c("aut", "cre")),
    person("Martin", "Aryee", email = "aryee.martin@mgh.harvard.edu", role = "aut")
    )
Maintainer: Caleb Lareau <caleblareau@g.harvard.edu>
Author: Caleb Lareau [aut, cre], Martin Aryee [aut]
Description: A suite of tools for subsetting, visualizing, annotating,
        and statistically analyzing the results of one or more ChIA-PET
        experiments.
Imports: methods, GenomicRanges, foreach, plyr, dplyr, reshape2,
        ggplot2, matrixStats, Sushi, edgeR, locfit, statmod, biomaRt,
        GenomeInfoDb, S4Vectors, IRanges, grDevices, graphics, stats,
        utils, Biobase, readr
License: MIT + file LICENSE
LazyData: TRUE
Suggests: diffloopdata, knitr, rmarkdown, testthat
VignetteBuilder: knitr
RoxygenNote: 5.0.1
Collate: 'diffloop.R' 'diffloop-class.R' 'data.R' 'core.R'
        'pipeline_io.R' 'loopFunctions.R' 'sugar.R' 'union.R'
        'annotation.R' 'assoc.R' 'colData.R' 'plotting.R'
biocViews: Preprocessing, QualityControl, Visualization, DataImport,
        DataRepresentation, GO
NeedsCompilation: no
Packaged: 2016-05-16 05:50:38 UTC; biocbuild
Built: R 3.3.0; ; 2016-05-16 15:04:41 UTC; unix
