derfinder-package	derfinder-package
advancedArg	advancedArg
advanced_arg	derfinder-defunct
analyzeChr	analyzeChr
analyze_chr	derfinder-defunct
annotateRegions	annotateRegions
annotate_regions	derfinder-defunct
calculatePvalues	calculatePvalues
calculateStats	calculateStats
calculate_pvalues	derfinder-defunct
calculate_stats	derfinder-defunct
coerceGR	coerceGR
coerce_gr	derfinder-defunct
collapseFullCoverage	collapseFullCoverage
collapse_full_coverage	derfinder-defunct
coverageToExon	coverageToExon
coverage_to_exon	derfinder-defunct
createBw	createBw
createBwSample	createBwSample
create_bw	derfinder-defunct
create_bw_sample	derfinder-defunct
derfinder-defunct	derfinder-defunct
extendedMapSeqlevels	extendedMapSeqlevels
extended_map_seqlevels	derfinder-defunct
filterData	filterData
filter_data	derfinder-defunct
findRegions	findRegions
find_regions	derfinder-defunct
fullCoverage	fullCoverage
full_coverage	derfinder-defunct
genomeData	genomeData
genomeDataRaw	genomeDataRaw
genomeFstats	genomeFstats
genomeInfo	genomeInfo
genomeRegions	genomeRegions
genomicState	genomicState
getRegionCoverage	getRegionCoverage
get_region_coverage	derfinder-defunct
loadCoverage	loadCoverage
load_coverage	derfinder-defunct
makeGenomicState	makeGenomicState
makeModels	makeModels
make_genomic_state	derfinder-defunct
make_models	derfinder-defunct
mergeResults	mergeResults
merge_results	derfinder-defunct
preprocessCoverage	preprocessCoverage
preprocess_coverage	derfinder-defunct
railMatrix	railMatrix
rawFiles	rawFiles
raw_files	derfinder-defunct
regionMatrix	regionMatrix
region_matrix	derfinder-defunct
sampleDepth	sampleDepth
sample_depth	derfinder-defunct
