cellTree-package | Inference and visualisation of Single-Cell RNA-seq Data data as a hierarchical tree structure |
cell.ordering.table | Ranking of cells according to backbone tree structure |
cellTree | Inference and visualisation of Single-Cell RNA-seq Data data as a hierarchical tree structure |
compute.backbone.tree | Backbone Tree construction |
compute.go.enrichment | Gene Ontology enrichment analysis |
compute.lda | LDA model inference |
ct.plot.go.dag | Gene Ontology enrichment sets plotting |
ct.plot.grouping | Plot cell tree with grouping information |
ct.plot.heatmap | Gene Expression Heatmap |
ct.plot.topics | Plot cell tree with topic distributions |
get.cell.dists | Cell Pairwise-Distance Matrix |
go.results.to.latex | LaTeX output for Gene Ontology Enrichment results |
HSMM_lda_model | Pre-computed LDA model for HSMMSingleCell data |