calculate_distance | Calculate a distance matrix |
cell_filter | Cell filter |
consensus_matrix | Calculate consensus matrix |
gene_filter | Gene filter |
get_data | Import expression matrix |
get_de_genes | Find differentially expressed genes |
get_marker_genes | Find marker genes |
get_outl_cells | Find cell outliers |
iwanthue | Generate a colour palette by k-means clustering of LAB colour space. |
norm_laplacian | Graph Laplacian calculation |
sc3 | SC3 main function |
sc3_interactive | SC3 interactive function |
StabilityIndex | Calculate the stability index of the obtained clusters when changing k |
support_vector_machines | Run support vector machines (SVM) prediction |
swatch | Plot colour swatches for a vector of colours |
transformation | Distance matrix transformation |
treutlein | Single cell RNA-Seq data extracted from a publication by Treutlein et al. |