Parametric Gene Set Enrichment Analysis


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Documentation for package ‘PGSEA’ version 1.46.0

Help Pages

aggregateExprs Aggregate expression data
convertSmc Convert Entrez ID based "smc" object
editSmc Edit "smc" objects
go2smc Gene Ontology 2 "smc"
GOLUBmcs Molecular Concepts prepared at VAI from data created by Golub et al.
kegg2smc KEGG pathway to "smc"
nbEset Reduced Neuroblastoma data set
PGSEA Parametric Gene Set Enrichment Analysis
readGmt readGmt
readSmc Read SMC files
scanSmc Scan through smc objects
smc-class Read SMC files
smcPlot Plot PGSEA results
VAIgsc Molecular Concepts (Gene Sets) prepared at VAI
VAImcs Molecular Concepts prepared at VAI
writeGmt writeGmt
writeSmc writeSmc