Ensemble of Gene Set Enrichment Analyses


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Documentation for package ‘EGSEA’ version 1.0.3

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EGSEA-package Ensemble of Gene Enrichment Analysis (EGSEA)
buildCustomIdxEZID Custom Gene Set Collection Index
buildGeneSetDBIdxEZID Gene Set Collection Indexes from the GeneSetDB Database
buildIdxEZID Generate Gene Set Collection Indexes from the MSigDB and KEGG Databases
buildKEGGIdxEZID Gene Set Collection Index from the KEGG Database
buildMSigDBIdxEZID Gene Set Collection Indexes from the MSigDB Database
EGSEA Ensemble of Gene Enrichment Analysis (EGSEA)
egsea Ensemble of Gene Set Enrichment Analyses Function
egsea.base EGSEA Base GSE Methods
egsea.cnt Ensemble of Gene Set Enrichment Analyses Function
egsea.combine EGSEA P-value Combining Options
egsea.ora Over-representation Analysis with EGSEA Reporting Capabilities
egsea.sort EGSEA Result Sorting Options
topSets Table of Top Gene Sets from an EGSEA Analysis