EGSEA-package | Ensemble of Gene Enrichment Analysis (EGSEA) |
buildCustomIdxEZID | Custom Gene Set Collection Index |
buildGeneSetDBIdxEZID | Gene Set Collection Indexes from the GeneSetDB Database |
buildIdxEZID | Generate Gene Set Collection Indexes from the MSigDB and KEGG Databases |
buildKEGGIdxEZID | Gene Set Collection Index from the KEGG Database |
buildMSigDBIdxEZID | Gene Set Collection Indexes from the MSigDB Database |
EGSEA | Ensemble of Gene Enrichment Analysis (EGSEA) |
egsea | Ensemble of Gene Set Enrichment Analyses Function |
egsea.base | EGSEA Base GSE Methods |
egsea.cnt | Ensemble of Gene Set Enrichment Analyses Function |
egsea.combine | EGSEA P-value Combining Options |
egsea.ora | Over-representation Analysis with EGSEA Reporting Capabilities |
egsea.sort | EGSEA Result Sorting Options |
topSets | Table of Top Gene Sets from an EGSEA Analysis |