Package: CancerMutationAnalysis
Type: Package
Title: Cancer mutation analysis
Version: 1.14.0
Author: Giovanni Parmigiani, Simina M. Boca
Maintainer: Simina M. Boca <smb310@georgetown.edu>
Imports: AnnotationDbi, limma, methods, stats
Depends: R (>= 2.10.0), qvalue
Suggests: KEGG.db
Description: This package implements gene and gene-set level analysis
        methods for somatic mutation studies of cancer.  The gene-level
        methods distinguish between driver genes (which play an active
        role in tumorigenesis) and passenger genes (which are mutated
        in tumor samples, but have no role in tumorigenesis) and
        incorporate a two-stage study design.  The gene-set methods
        implement a patient-oriented approach, which calculates
        gene-set scores for each sample, then combines them across
        samples; a gene-oriented approach which uses the Wilcoxon test
        is also provided for comparison.
License: GPL (>= 2) + file LICENSE
LazyLoad: yes
biocViews: Genetics, Software
NeedsCompilation: yes
Packaged: 2016-05-04 03:24:26 UTC; biocbuild
Built: R 3.3.0; x86_64-apple-darwin13.4.0; 2016-05-04 14:29:17 UTC; unix
