sesameData
Supporting Data for SeSAMe Package
Bioconductor version: 3.24 · Package version: 1.31.0
Provides supporting annotation and test data for SeSAMe package. This includes chip tango addresses, mapping information, performance annotation, and trained predictor for Infinium array data. This package provides user access to essential annotation data for working with many generations of the Infinium DNA methylation array. Currently we support human array (HM27, HM450, EPIC), mouse array (MM285) and the HorvathMethylChip40 (Mammal40) array.
Installation
if (!require("BiocManager", quietly = TRUE))
install.packages("BiocManager")
BiocManager::install("sesameData")Details
| Maintainer | Wanding Zhou <zhouwanding@gmail.com> |
| Author | Wanding Zhou [aut, cre, fnd] (ORCID: <https://orcid.org/0000-0001-9126-1932>), Hui Shen [aut, fnd], Timothy Triche [ctb] |
| License | Artistic-2.0 |
| URL | https://github.com/zwdzwd/sesame |
| Bug Reports | https://github.com/zwdzwd/sesame/issues |
| Downloads rank | 1125 |
| Source branch | devel |
| biocViews | ExperimentData, ExperimentHub, Genome, MethylationArrayData, MicroarrayData |
Download
Follow the installation instructions to use this package in your R session.
| Source package | sesameData_1.31.0.tar.gz |
Dependencies
Depends: R (>= 4.3.0), ExperimentHub, AnnotationHub
Imports: utils, readr, stringr, GenomicRanges (>= 1.61.1), S4Vectors, IRanges, Seqinfo
Suggests: BiocGenerics, GenomeInfoDb, sesame, testthat, knitr, rmarkdown