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orthosData

Data for the orthos package

Bioconductor version: 3.24 · Package version: 1.11.0

`orthosData` is the companion ExperimentData package to the `orthos` R package for mechanistic studies using differential gene expression experiments. It provides functions for retrieval from ExperimentHub and local caching of the models and datasets used internally in orthos.

Installation

if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("orthosData")

Details

MaintainerPanagiotis Papasaikas <panagiotis.papasaikas@fmi.ch>
AuthorPanagiotis Papasaikas [aut, cre] (ORCID: <https://orcid.org/0000-0002-1640-7636>), Charlotte Soneson [aut] (ORCID: <https://orcid.org/0000-0003-3833-2169>), Michael Stadler [aut] (ORCID: <https://orcid.org/0000-0002-2269-4934>), Friedrich Miescher Institute for Biomedical Research [cph]
LicenseMIT + file LICENSE
URLhttps://github.com/fmicompbio/orthosData
Bug Reportshttps://github.com/fmicompbio/orthosData/issues
Downloads rank139
Source branchdevel
biocViewsExperimentData, ExperimentHub, RNASeqData

Download

Follow the installation instructions to use this package in your R session.

Source packageorthosData_1.11.0.tar.gz
Dependencies

Imports: AnnotationHub, BiocFileCache, ExperimentHub, HDF5Array, stringr, SummarizedExperiment

Suggests: BiocStyle, ggplot2, knitr, rmarkdown, testthat

Reverse dependencies

Imports Me (1): orthos