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davidTiling

Data and analysis scripts for David, Huber et al. yeast tiling array paper

Bioconductor version: 3.24 · Package version: 1.53.1

This package contains the data for the paper by L. David et al. in PNAS 2006 (PMID 16569694): 8 CEL files of Affymetrix genechips, an ExpressionSet object with the raw feature data, a probe annotation data structure for the chip and the yeast genome annotation (GFF file) that was used. In addition, some custom-written analysis functions are provided, as well as R scripts in the scripts directory.

Installation

if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("davidTiling")

Details

MaintainerWolfgang Huber <wolfgang.huber@embl.org>
AuthorWolfgang Huber [aut, cre]
LicenseLGPL
URLhttp://www.ebi.ac.uk/huber
Downloads rank255
Source branchdevel
biocViewsExperimentData, Genome, MicroarrayData, ReproducibleResearch, Saccharomyces_cerevisiae_Data

Download

Follow the installation instructions to use this package in your R session.

Source packagedavidTiling_1.53.1.tar.gz
Dependencies

Depends: R (>= 4.0.0), Biobase (>= 2.5.5), tilingArray, GO.db, methods