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curatedAdipoChIP

A Curated ChIP-Seq Dataset of MDI-induced Differentiated Adipocytes (3T3-L1)

Bioconductor version: 3.24 · Package version: 1.29.0

A curated dataset of publicly available ChIP-sequencing of transcription factors, chromatin remodelers and histone modifications in the 3T3-L1 pre-adipocyte cell line. The package document the data collection, pre-processing and processing of the data. In addition to the documentation, the package contains the scripts that was used to generated the data.

Installation

if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("curatedAdipoChIP")

Details

MaintainerMahmoud Ahmed <mahmoud.s.fahmy@students.kasralainy.edu.eg>
AuthorMahmoud Ahmed [aut, cre] (ORCID: <https://orcid.org/0000-0002-4377-6541>)
LicenseGPL-3
URLhttps://github.com/MahShaaban/curatedAdipoChIP
Bug Reportshttps://github.com/MahShaaban/curatedAdipoChIP/issues
Downloads rank146
Source branchdevel
biocViewsChIPSeqData, ExperimentData, ExperimentHub, GEO, SequencingData

Download

Follow the installation instructions to use this package in your R session.

Source packagecuratedAdipoChIP_1.29.0.tar.gz
Dependencies

Depends: R (>= 3.6), SummarizedExperiment, ExperimentHub

Suggests: knitr, rmarkdown, GenomicFeatures, ChIPseeker, AnnotationDbi, S4Vectors, DESeq2, fastqcr, devtools, testthat, readr, dplyr, tidyr, ggplot2