celldex
Index of Reference Cell Type Datasets
Bioconductor version: 3.24 · Package version: 1.23.0
Provides a collection of reference expression datasets with curated cell type labels, for use in procedures like automated annotation of single-cell data or deconvolution of bulk RNA-seq.
Installation
if (!require("BiocManager", quietly = TRUE))
install.packages("BiocManager")
BiocManager::install("celldex")Details
| Maintainer | Aaron Lun <infinite.monkeys.with.keyboards@gmail.com> |
| Author | Dvir Aran [aut], Aaron Lun [aut, cre, cph], Daniel Bunis [aut], Jared Andrews [aut], Friederike Dündar [aut] |
| License | GPL-3 |
| URL | https://github.com/LTLA/celldex |
| Bug Reports | https://support.bioconductor.org/ |
| Downloads rank | 5458 |
| Source branch | devel |
| biocViews | ExperimentData, ExperimentHub, ExpressionData, RNASeqData, SequencingData |
Download
Follow the installation instructions to use this package in your R session.
| Source package | celldex_1.23.0.tar.gz |
Dependencies
Depends: SummarizedExperiment
Imports: utils, methods, Matrix, ExperimentHub, AnnotationHub, AnnotationDbi, S4Vectors, DelayedArray, DelayedMatrixStats, gypsum, alabaster.base, alabaster.matrix, alabaster.se, DBI, RSQLite, jsonlite
Suggests: testthat, knitr, rmarkdown, BiocStyle, DT, jsonvalidate, BiocManager, ensembldb
Reverse dependencies
Imports Me (1): singleCellTK
Suggests Me (8): augere.solo, ontoProc, scCertify, scDiagnostics, scGraphVerse, SingleR, sketchR, tidySingleCellExperiment