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aracne.networks

ARACNe-inferred gene networks from TCGA tumor datasets

Bioconductor version: 3.24 · Package version: 1.39.1

This package provides access to ARACNe-inferred gene regulatory networks (regulons) from TCGA tumor datasets. The networks are hosted on Zenodo, downloaded on demand and cached locally with BiocFileCache. The package also contains a function to export them into plain-text format.

Installation

if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("aracne.networks")

Details

MaintainerFederico M. Giorgi <federico.giorgi@gmail.com>
AuthorFederico M. Giorgi [aut, cre] (ORCID: <https://orcid.org/0000-0002-7325-9908>), Mariano J. Alvarez [aut]
Licensefile LICENSE
URLhttps://github.com/federicogiorgi/aracne.networks
Bug Reportshttps://github.com/federicogiorgi/aracne.networks/issues
Downloads rank179
Source branchdevel
biocViewsCancerData, ExperimentData, Genome, Homo_sapiens_Data

Download

Follow the installation instructions to use this package in your R session.

Source packagearacne.networks_1.39.1.tar.gz
Dependencies

Depends: R (>= 4.0), viper

Imports: BiocFileCache, tools, utils

Suggests: BiocStyle, knitr, rmarkdown, testthat