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SpatialDatasets

Collection of spatial omics datasets

Bioconductor version: 3.24 · Package version: 1.11.0

This is a collection of publically available spatial omics datasets. Where possible we have curated these datasets as either SpatialExperiments, MoleculeExperiments or CytoImageLists and included annotations of the sample characteristics.

Installation

if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("SpatialDatasets")

Details

MaintainerEllis Patrick <ellis.patrick@sydney.edu.au>
AuthorFarhan Ameen [aut], Nick Robertson [aut], Alex Qin [aut], Shreya Rao [aut], Elijah Willie [aut], Ellis Patrick [aut, cre]
LicenseGPL-3
URLhttps://github.com/SydneyBioX/SpatialDatasets
Bug Reportshttps://github.com/SydneyBioX/SpatialDatasets/issues
Downloads rank142
Source branchdevel
biocViewsExperimentData, ExperimentHub, Homo_sapiens_Data, Mus_musculus_Data, ReproducibleResearch, SingleCellData, SpatialData

Download

Follow the installation instructions to use this package in your R session.

Source packageSpatialDatasets_1.11.0.tar.gz
Dependencies

Depends: ExperimentHub, SpatialExperiment

Imports: utils

Suggests: BiocStyle, knitr, rmarkdown, cytomapper

Reverse dependencies

Suggests Me (3): lisaClust, multipointR, spicyR