HuMMANet
Curated Paired Human Microbiome-Metabolome Study Data
Bioconductor version: 3.24 · Package version: 0.99.3
Provides access to curated paired human microbiome-metabolome study bundles available through Bioconductor ExperimentHub. The package organizes matched sample metadata, species abundance profiles, original and harmonized metabolite profiles, and study-specific annotation resources including metabolite identifier mappings, microbial producer annotations, disease associations, pathway annotations, and drug similarity matches. The resource is designed to support consistent and reproducible cross-study microbiome-metabolome analyses.
Installation
if (!require("BiocManager", quietly = TRUE))
install.packages("BiocManager")
BiocManager::install("HuMMANet") Details
| Maintainer | Nalin Arora <naa4050@med.cornell.edu> |
| Author | Shivangi Verma [aut, fnd] (ORCID: <https://orcid.org/0009-0006-8505-0032>), Nalin Arora [aut, cre] (ORCID: <https://orcid.org/0009-0009-1340-688X>), Himel Mallick [aut] (ORCID: <https://orcid.org/0000-0003-4956-2429>), Tarini Shankar Ghosh [aut, fnd] (ORCID: <https://orcid.org/0000-0001-9570-0365>) |
| License | MIT + file LICENSE |
| URL | https://github.com/ShivangiV-IIITD/HuMMANet |
| Bug Reports | https://github.com/ShivangiV-IIITD/HuMMANet/issues |
| Source branch | devel |
| biocViews | ExperimentData, ExperimentHub, Homo_sapiens_Data, MicrobiomeData |
Download
Follow the installation instructions to use this package in your R session.
| Source package | HuMMANet_0.99.3.tar.gz |
Dependencies
Depends: R (>= 4.6.0)
Imports: ExperimentHub, MultiAssayExperiment, S4Vectors, SummarizedExperiment, stats, utils
Suggests: BiocStyle, knitr, rmarkdown, testthat (>= 3.0.0)