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HuMMANet

Curated Paired Human Microbiome-Metabolome Study Data

Bioconductor version: 3.24 · Package version: 0.99.3

Provides access to curated paired human microbiome-metabolome study bundles available through Bioconductor ExperimentHub. The package organizes matched sample metadata, species abundance profiles, original and harmonized metabolite profiles, and study-specific annotation resources including metabolite identifier mappings, microbial producer annotations, disease associations, pathway annotations, and drug similarity matches. The resource is designed to support consistent and reproducible cross-study microbiome-metabolome analyses.

Installation

if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("HuMMANet")

Details

MaintainerNalin Arora <naa4050@med.cornell.edu>
AuthorShivangi Verma [aut, fnd] (ORCID: <https://orcid.org/0009-0006-8505-0032>), Nalin Arora [aut, cre] (ORCID: <https://orcid.org/0009-0009-1340-688X>), Himel Mallick [aut] (ORCID: <https://orcid.org/0000-0003-4956-2429>), Tarini Shankar Ghosh [aut, fnd] (ORCID: <https://orcid.org/0000-0001-9570-0365>)
LicenseMIT + file LICENSE
URLhttps://github.com/ShivangiV-IIITD/HuMMANet
Bug Reportshttps://github.com/ShivangiV-IIITD/HuMMANet/issues
Source branchdevel
biocViewsExperimentData, ExperimentHub, Homo_sapiens_Data, MicrobiomeData

Download

Follow the installation instructions to use this package in your R session.

Source packageHuMMANet_0.99.3.tar.gz
Dependencies

Depends: R (>= 4.6.0)

Imports: ExperimentHub, MultiAssayExperiment, S4Vectors, SummarizedExperiment, stats, utils

Suggests: BiocStyle, knitr, rmarkdown, testthat (>= 3.0.0)