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CLLmethylation

Methylation data of primary CLL samples in PACE project

Bioconductor version: 3.24 · Package version: 1.33.0

The package includes DNA methylation data for the primary Chronic Lymphocytic Leukemia samples included in the Primary Blood Cancer Encyclopedia (PACE) project. Raw data from the 450k DNA methylation arrays is stored in the European Genome-Phenome Archive (EGA) under accession number EGAS0000100174. For more information concerning the project please refer to the paper "Drug-perturbation-based stratification of blood cancer" by Dietrich S, Oles M, Lu J et al., J. Clin. Invest. (2018) and R/Bioconductor package BloodCancerMultiOmics2017.

Installation

if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("CLLmethylation")

Details

MaintainerMalgorzata Oles <dr.malgorzata.oles@gmail.com>, Andreas Mock <andreas.mock@embl.de>
AuthorMalgorzata Oles, Andreas Mock
LicenseLGPL
Downloads rank155
Source branchdevel
biocViewsCancerData, DiseaseModel, ExperimentData, LeukemiaCancerData

Download

Follow the installation instructions to use this package in your R session.

Source packageCLLmethylation_1.33.0.tar.gz
Dependencies

Depends: R (>= 3.5.0)

Imports: SummarizedExperiment, ExperimentHub

Suggests: BiocStyle, ggplot2, knitr, rmarkdown