XtraSNPlocs.Hsapiens.dbSNP144.GRCh37
Extra SNP locations for Homo sapiens (dbSNP Build 144)
Bioconductor version: 3.24 · Package version: 0.99.12
Extra SNP locations and alleles for Homo sapiens extracted from NCBI dbSNP Build 144. The source data files used for this package were created by NCBI on May 29-30, 2015, and contain SNPs mapped to reference genome GRCh37.p13 (a patched version of GRCh37 that doesn't alter chromosomes 1-22, X, Y, MT). While the SNPlocs.Hsapiens.dbSNP144.GRCh37 package contains only molecular variations of class "snp", this package contains molecular variations of other classes (in-del, heterozygous, microsatellite, named-locus, no-variation, mixed, and multinucleotide-polymorphism).
Installation
if (!require("BiocManager", quietly = TRUE))
install.packages("BiocManager")
BiocManager::install("XtraSNPlocs.Hsapiens.dbSNP144.GRCh37") Details
| Maintainer | H. Pages <hpages@fhcrc.org> |
| Author | Herve Pages |
| License | Artistic-2.0 |
| Downloads rank | 96 |
| Source branch | devel |
| biocViews | AnnotationData, Genetics, Homo_sapiens, XtraSNPlocs |
Download
Follow the installation instructions to use this package in your R session.
| Source package | XtraSNPlocs.Hsapiens.dbSNP144.GRCh37_0.99.12.tar.gz |
Dependencies
Depends: R (>= 2.10), BSgenome
Imports: methods, utils, BiocGenerics, S4Vectors, IRanges, GenomeInfoDb, GenomicRanges, BSgenome
Suggests: Biostrings, BSgenome.Hsapiens.UCSC.hg19, SNPlocs.Hsapiens.dbSNP144.GRCh37
Reverse dependencies
Imports Me (1): appreci8R