TxDb.Hsapiens.UCSC.hg38.knownGene
Annotation package for TxDb object(s)
Bioconductor version: 3.24 · Package version: 3.22.0
Exposes an annotation databases generated from UCSC by exposing these as TxDb objects
Installation
if (!require("BiocManager", quietly = TRUE))
install.packages("BiocManager")
BiocManager::install("TxDb.Hsapiens.UCSC.hg38.knownGene")Details
| Maintainer | Bioconductor Package Maintainer <maintainer@bioconductor.org> |
| Author | Bioconductor Core Team, Bioconductor Package Maintainer <maintainer@bioconductor.org> [cre] |
| License | Artistic-2.0 |
| Downloads rank | 3695 |
| Source branch | devel |
| biocViews | AnnotationData, Genetics, Homo_sapiens, TxDb |
Download
Follow the installation instructions to use this package in your R session.
| Source package | TxDb.Hsapiens.UCSC.hg38.knownGene_3.22.0.tar.gz |
Reverse dependencies
Imports Me (14): crupR, decompTumor2Sig, DegCre, DNAfusion, gINTomics, musicatk, OutSplice, profileplyr, rCGH, rGREAT, signifinder, sigvar, strandCheckR, uncoverappLib
Suggests Me (46): annotatr, bambu, BSgenome, BUSpaRse, chipenrich.data, ChIPpeakAnno, ChIPseeker, cinaR, CRISPRseek, DOTSeq, driveR, DuckDBGRanges, enhancerHomologSearch, EpiCompare, epimutacions, epiRomics, epiSeeker, EpiTxDb, gDNAx, geneAttribution, GenomicDataCommons, GenomicFeatures, GenomicRanges, GenomicScores, GenVisR, GRaNIE, hicVennDiagram, ideal, lisat, mariner, mosdef, NanoMethViz, NoRCE, plotgardener, podkat, raer, rigvf, scmeth, SEMPLR, Seqinfo, SOMNiBUS, SPICEY, TFEA.ChIP, Ularcirc, wiggleplotr, xcoredata