SNPlocs.Hsapiens.dbSNP155.GRCh37

Human SNP locations and alleles extracted from dbSNP Build 155 and placed on the GRCh37/hg19 assembly

Bioconductor version: 3.24 · Package version: 0.99.24

The 929,496,192 SNPs in this package were extracted from the RefSNP JSON files for chromosomes 1-22, X, Y, and MT, located at https://ftp.ncbi.nih.gov/snp/archive/b155/JSON/ (these files were created by NCBI in May 2021). These SNPs can be "injected" in BSgenome.Hsapiens.UCSC.hg19.

Installation

if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("SNPlocs.Hsapiens.dbSNP155.GRCh37")

Details

Maintainer	Hervé Pagès <hpages.on.github@gmail.com>
Author	Hervé Pagès
License	Artistic-2.0
Downloads rank	398
Source branch	devel
biocViews	AnnotationData, Genetics, Homo_sapiens, SNPlocs

Download

Follow the installation instructions to use this package in your R session.

Source package

SNPlocs.Hsapiens.dbSNP155.GRCh37_0.99.24.tar.gz

Dependencies

Depends: R (>= 4.2.0), BSgenome (>= 1.67.2)

Imports: methods, utils, BiocGenerics, S4Vectors, IRanges, GenomeInfoDb, GenomicRanges, BSgenome

Suggests: Biostrings, BSgenome.Hsapiens.UCSC.hg19

Reverse dependencies

Suggests Me (2): motifbreakR, MungeSumstats