d34c3f691539decdebad90bc913135ed *DESCRIPTION
38970a715f1726fab4415dc351751a9d *NAMESPACE
3ce30782c07163e73e5d645fa47a1262 *NEWS.md
cf80fb67b0ed1f1a7dad231c9d6a61f1 *R/ASTRAL.R
f726cfef07ae995c2ad14a0296fe9d61 *R/AllClasses.R
5d3411dabea6f4f0d66e2792b6516b3a *R/AllGenerics.R
00fe390494f3f911eee7f2099a0b65b4 *R/MCMCTree.R
95e1b185516c53ac634f72c22ba4393e *R/RAxML.R
88f37fe9a445dc28e3ce435bb5b3ac63 *R/ape.R
49f97891be927eb59ef86a060e0d38a2 *R/beast.R
a29ed9c9ae8e82487942c7b4a5d3a9fe *R/codeml.R
ac24e6de92d702338a1ca1700c3dd9aa *R/codeml_mlc.R
5710c6b760dc6b8a0d46b2666c8bd470 *R/hyphy.R
baa07de345f59f64a5094f5bc5a048f2 *R/iqtree.R
254e972386dbaadf0012719be9bc192b *R/jplace.R
f6d65e5563a8b0fdc41605b34a31e1a1 *R/jtree.R
dc141df42adbbc050d574138a842829e *R/mask.R
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facce35efee567cc24d6e54d1b3d9b79 *R/merge_tree.R
7c864bce32da327ecd40b2c474ff2384 *R/method-as-phylo.R
81f6d7e81cda3aa5d8e3838b5e6d17d3 *R/method-as-treedata.R
1048a4008c74d50a32efa493bfe2d0cf *R/method-spt.R
4a1cfc9dd2d742346e8b2d67e3cad72c *R/newick.R
8a2144ee8dba0f7913d1716520ab0bb4 *R/nextstrain.json.R
4f3127d0ca257565dd0bc738d51a7e64 *R/nhx.R
110f09063fcb10310fec92925b11d45b *R/paml.R
37ce1b70d68c48f3914ca206d866b947 *R/paml_rst.R
440f7f9442a981901cf0144e0310e6c7 *R/phangorn.R
7678cc1047640b46ef1e9040b473558d *R/phylip.R
41f6029ac77d2d362372a9b225f8f4e3 *R/phyloxml.R
2533dc01ffc5181ba59e09ea1420c3d1 *R/print.R
0b8418fd5d38ce2d1d6da3c2d541c5eb *R/r8s.R
c4020792bc23f52a2e3ffb2d710c185c *R/raxml2nwk.R
e5db864aa15625d2c2bc01102ccc9536 *R/reexport.R
b11cfa8c0a9246f42d68fd6e2a5809d6 *R/rename.R
8249bb91d55a5884f75befb4b38b1be2 *R/reroot-utilities.R
d4fd8cb4432dd64126e1f5e3d51464a3 *R/rescale_tree.R
8481c1a4ebbb8d7b7d9bd1363d4d67c5 *R/sequence-utilities.R
3d2778ac59bde44ae8dd5f2c768d7a07 *R/tree-utilities.R
df6cc46bc7fae1a55b713f3d5065b35a *R/treeio-package.R
ac1d02df0874d11a4c7a4d0c1d62d931 *R/treeqza.R
931513877527d798c22a52e9031f4b68 *R/treetime.R
4e2f7ef1156395613237c34444eb7b58 *R/utilities.R
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9815bd2f8ac7dd0c52c7c44dae193d43 *R/write-jplace.R
f04edd212411e75d033f6a1cb5e0e2ce *R/zzz.R
2b9d7b7b72a8cdc5a461b42869eccef0 *README.md
6ba4d65da7dee39375f44977bdceefe5 *build/vignette.rds
df48a7425eb32426c40bf06dc995847d *inst/CITATION
b51c42c5cd26de1d0bc4f1f3b72a805d *inst/doc/treeio.R
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1fde7911e63579018236a4b6c0d53c37 *inst/extdata/r8s/H3.r8s
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7e66a3042f58cb8b9ea8b2e67651ddc7 *man/getNodeNum.Rd
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2a517c80da384c329f43330ad07032b3 *man/label_branch_paml.Rd
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133af2be819970ea13ba74366c73f777 *man/read-jtree.Rd
601b5ba785112af0bcea8f783c82aa4e *man/read.astral.Rd
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fe4a5ee1ceab3d357e5f935a7337003c *man/read.codeml_mlc.Rd
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7bd6076d34012d6a90a482efdcff8750 *man/read.hyphy.Rd
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4ebbe54a5da1478824d5c126bde6024e *man/read.nhx.Rd
60b805edaeb35142ac83d64f4555bbad *man/read.paml_rst.Rd
7ae801a94b213fd1d8ccee59f854648f *man/read.phylip.Rd
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f6aac83ea3079ae74cf66924d1704a77 *tests/testthat/test-utilities.R
39f1cc80ac4ad97deb86ec9cac26cde3 *vignettes/treeio.Rmd
