Package: spatialdataR
Title: Representation of Python's spatialdata in R
Depends: R (>= 4.6)
Version: 0.99.44
Description: R interface to Python/scverse's 'spatialdata' framework for 
    unified spatial omics data handling. Adheres to OME-NGFF standards, 
    providing lazy, on-disk representations for multiscale images and 
    labels (ZarrArray), as well as points and shapes (DuckDB-backed 
    tables). Includes handling of coordinate transformation systems and 
    spatial utilities for cropping, masking, and querying. Integrates 
    tabular annotations as 'SingleCellExperiment's (via 'anndataR'), 
    enabling interoperable spatial omics workflows across R and Python.
Authors@R: c(
	person("Helena L.", "Crowell", 
	    role=c("aut", "cre"),
	    email="helena@crowell.eu", 
	    comment=c(ORCID="0000-0002-4801-1767")),
    person("Artür", "Manukyan",
        role=c("aut"),
        email="artur-man@hotmail.com",
        comment=c(ORCID="0000-0002-0441-9517")),
    person("Hugo", "Gruson",
        role=c("aut"),
        email="hugo.gruson@embl.de",
        comment=c(ORCID="0000-0002-4094-1476")),
    person("Vince", "Carey",
        role=c("aut"),
        email="stvjc@channing.harvard.edu",
        comment=c(ORCID="0000-0003-4046-0063")))
Imports: anndataR (>= 1.1.3), BiocGenerics (>= 0.59.6), DBI,
        DelayedArray, dplyr, duckspatial, graph, Matrix, methods, Rarr,
        RBGL, rlang, sf, S4Vectors, SingleCellExperiment,
        SummarizedExperiment, SparseArray, ZarrArray
Suggests: BiocStyle, EBImage, knitr, Rgraphviz, testthat
biocViews: DataImport, DataRepresentation, Infrastructure,
        ImmunoOncology, GeneExpression, Transcriptomics, SingleCell,
        Spatial
License: Artistic-2.0
Encoding: UTF-8
VignetteBuilder: knitr
BugReports: https://github.com/HelenaLC/spatialdataR/issues
URL: https://helenalc.github.io/spatialdataR,
        https://github.com/HelenaLC/spatialdataR
Config/roxygen2/version: 8.0.0
git_url: https://git.bioconductor.org/packages/spatialdataR
git_branch: devel
git_last_commit: fe24cf0
git_last_commit_date: 2026-07-05
Repository: Bioconductor 3.24
Date/Publication: 2026-08-28
NeedsCompilation: no
Packaged: 2026-08-29 00:37:22 UTC; biocbuild
Author: Helena L. Crowell [aut, cre] (ORCID:
    <https://orcid.org/0000-0002-4801-1767>),
  Artür Manukyan [aut] (ORCID: <https://orcid.org/0000-0002-0441-9517>),
  Hugo Gruson [aut] (ORCID: <https://orcid.org/0000-0002-4094-1476>),
  Vince Carey [aut] (ORCID: <https://orcid.org/0000-0003-4046-0063>)
Maintainer: Helena L. Crowell <helena@crowell.eu>
