# Generated by roxygen2: do not edit by hand

export(.SPE2df)
export(.df2ppp)
export(.intensityImage)
export(.intensityThreshold)
export(SPE2ppp)
export(assingCellsToStructures)
export(binaryImageToSF)
export(cellTypeProportions)
export(createPointPatternTissue)
export(estimateReconstructionParametersSPE)
export(findIntensityThreshold)
export(getDimXY)
export(meanShapeMetrics)
export(minBoundaryDistances)
export(minCellTypeStructDist)
export(normalizeCoordinates)
export(reconstructShapeDensity)
export(reconstructShapeDensityImage)
export(reconstructShapeDensitySPE)
export(shapeIntensityImage)
export(shapeMetrics)
export(simulateTissueBlobs)
export(spatialCoords2SF)
export(stCalculateCurvature)
export(stCalculateShapeCurl)
export(stFeatureAxes)
export(totalShapeMetrics)
export(xyCoordinates)
importFrom(EBImage,gblur)
importFrom(S4Vectors,split)
importFrom(SingleCellExperiment,colData)
importFrom(SpatialExperiment,
  spatialCoords,
  spatialCoordsNames
)
importFrom(SummarizedExperiment,
  assays,
  colData
)
importFrom(dplyr,
  bind_rows,
  filter,
  full_join
)
importFrom(ggplot2,
  aes,
  aes_string,
  coord_equal,
  element_text,
  geom_histogram,
  geom_tile,
  geom_vline,
  ggplot,
  labs,
  scale_color_viridis_c,
  theme,
  theme_classic,
  theme_light
)
importFrom(parallel,mclapply)
importFrom(patchwork,
  plot_annotation,
  wrap_plots
)
importFrom(rlang,.data)
importFrom(sf,
  st_area,
  st_as_sf,
  st_boundary,
  st_cast,
  st_convex_hull,
  st_coordinates,
  st_distance,
  st_drop_geometry,
  st_geometry,
  st_geometry_type,
  st_intersects,
  st_is_empty,
  st_length,
  st_make_valid,
  st_minimum_rotated_rectangle,
  st_set_geometry,
  st_sf,
  st_sfc,
  st_union
)
importFrom(smoothr,smooth)
importFrom(spatstat.explore,
  bw.diggle,
  density.ppp
)
importFrom(spatstat.geom,
  as.ppp,
  as.rectangle,
  grow.rectangle,
  marks,
  owin,
  setmarks,
  subset.ppp,
  superimpose
)
importFrom(spatstat.random,rpoispp)
importFrom(stats,
  aggregate,
  density,
  runif
)
importFrom(terra,
  as.polygons,
  ext,
  rast,
  set.ext,
  xmax,
  xmin,
  ymax,
  ymin
)
