Package: methylSig
Title: MethylSig: Differential Methylation Testing for WGBS and RRBS
        Data
Version: 1.25.12
Authors@R: 
    c(person(given = "Yongseok",
             family = "Park",
             role = "aut",
             email = "yongpark@pitt.edu"),
      person(given = "Raymond G.",
             family = "Cavalcante",
             role = c("aut", "cre"),
             email = "rcavalca@umich.edu"))
Description: MethylSig is a package for testing for
    differentially methylated cytosines (DMCs) or regions (DMRs) in
    whole-genome bisulfite sequencing (WGBS) or reduced representation
    bisulfite sequencing (RRBS) experiments.  MethylSig uses a beta
    binomial model to test for significant differences between groups of
    samples. Several options exist for either site-specific or sliding
    window tests, and variance estimation.
Depends: R (>= 4.6.0)
Imports: bsseq, DelayedArray, DelayedMatrixStats, DSS, IRanges,
        Seqinfo, GenomicRanges, methods, parallel, stats, S4Vectors
Suggests: BiocStyle, bsseqData, knitr, rmarkdown, testthat (>= 3.0.0),
        covr
License: GPL-3
URL: https://github.com/sartorlab/methylSig
BugReports: https://github.com/sartorlab/methylSig/issues
biocViews: DNAMethylation, DifferentialMethylation, Epigenetics,
        Regression, MethylSeq, Sequencing, Coverage
Encoding: UTF-8
VignetteBuilder: knitr
RoxygenNote: 7.1.0
Config/testthat/edition: 3
git_url: https://git.bioconductor.org/packages/methylSig
git_branch: devel
git_last_commit: 552f058
git_last_commit_date: 2026-09-26
Repository: Bioconductor 3.24
Date/Publication: 2026-09-27
NeedsCompilation: no
Packaged: 2026-09-27 22:48:40 UTC; biocbuild
Author: Yongseok Park [aut],
  Raymond G. Cavalcante [aut, cre]
Maintainer: Raymond G. Cavalcante <rcavalca@umich.edu>
