Package: meshes
Title: MeSH Enrichment and Semantic analyses
Version: 1.39.1
Authors@R: c(person(given = "Guangchuang", family = "Yu", email = "guangchuangyu@gmail.com",   role = c("aut", "cre")))
Description: Provides tools for MeSH (Medical Subject Headings) enrichment and
	     semantic similarity analysis. The package uses MeSH term annotations
	     linked to Entrez Gene identifiers through gendoo, gene2pubmed and RBBH,
	     enabling over-representation analysis, gene set enrichment analysis and
	     semantic comparison of gene lists or ranked expression profiles. It
	     implements Resnik, Schlicker, Jiang, Lin and Wang similarity methods for
	     comparing MeSH terms, genes and gene groups across more than 70 species.
Depends: R (>= 4.1.0)
Imports: enrichit, gson, AnnotationDbi, GOSemSim (> 2.37.0), methods,
        utils, AnnotationHub, MeSHDbi, yulab.utils (>= 0.1.5)
Suggests: knitr, quarto
VignetteBuilder: quarto
ByteCompile: true
License: Artistic-2.0
URL: https://yulab-smu.top/biomedical-knowledge-mining-book/
BugReports: https://github.com/YuLab-SMU/meshes/issues
biocViews: Annotation, Clustering, MultipleComparison, Software
Encoding: UTF-8
LazyData: true
Config/roxygen2/version: 8.0.0
git_url: https://git.bioconductor.org/packages/meshes
git_branch: devel
git_last_commit: 5b46b9d
git_last_commit_date: 2026-06-30
Repository: Bioconductor 3.24
Date/Publication: 2026-06-30
NeedsCompilation: no
Packaged: 2026-06-30 22:46:55 UTC; biocbuild
Author: Guangchuang Yu [aut, cre]
Maintainer: Guangchuang Yu <guangchuangyu@gmail.com>
