# Generated by roxygen2: do not edit by hand

S3method(cbind,na)
S3method(rbind,na)
export(CGDS)
export(Match_GeneList_MSigDB)
export(Run.GSEA)
export(UnifyRowNames)
export(about)
export(canceR)
export(canceR_Issue)
export(canceR_Vignette)
export(dialogGeneClassifier)
export(dialogMetOption)
export(dialogMut)
export(dialogOptionCircos)
export(dialogOptionGSEAlm)
export(dialogOptionPhenoTest)
export(dialogPlotOption_SkinCor)
export(dialogSamplingGSEA)
export(dialogSelectFiles_GSEA)
export(dialogSpecificMut)
export(dialogSummary_GSEA)
export(dialoggetGeneListMSigDB)
export(displayInTable)
export(getCases)
export(getCasesGenProfs)
export(getCircos)
export(getClinicData_MultipleCases)
export(getClinicalDataMatrix)
export(getFreqMutData)
export(getGCTCLSExample)
export(getGCT_CLSfiles)
export(getGSEAlm_Diseases)
export(getGSEAlm_Variables)
export(getGenProfs)
export(getGeneExpMatrix)
export(getGeneList)
export(getGeneListExample)
export(getGeneListFromMSigDB)
export(getGenesClassifier)
export(getGenesTree_MultipleCases)
export(getGenesTree_SingleCase)
export(getInTable)
export(getMSigDB)
export(getMSigDBExample)
export(getMSigDBfile)
export(getMegaProfData)
export(getMetDataMultipleGenes)
export(getMutData)
export(getPhenoTest)
export(getProfData)
export(getProfilesDataMultipleGenes)
export(getProfilesDataSingleGene)
export(getSpecificMut)
export(getSummaryGSEA)
export(getSurvival)
export(getTextWin)
export(geteSet)
export(modalDialog)
export(plotModel)
export(plot_1Gene_2GenProfs)
export(plot_2Genes_1GenProf)
export(setWorkspace)
export(test.CGDS)
export(testCheckedCaseGenProf)
import(Formula)
import(R.oo)
import(RUnit)
import(cBioPortalData)
import(circlize)
import(plyr)
import(rpart)
import(tcltk)
import(tkrplot)
importFrom(Biobase,
  ExpressionSet,
  exprs,
  openPDF,
  pData,
  varLabels
)
importFrom(GSEABase,
  GeneSet,
  GeneSetCollection
)
importFrom(R.methodsS3,setMethodS3)
importFrom(geNetClassifier,
  calculateGenesRanking,
  genesDetails
)
importFrom(grDevices,
  colors,
  dev.cur,
  dev.new,
  dev.off,
  graphics.off,
  jpeg,
  pdf,
  png,
  rainbow,
  savePlot
)
importFrom(graphics,
  axis,
  image,
  layout,
  legend,
  lines,
  par,
  plot,
  points,
  text
)
importFrom(phenoTest,
  ExpressionPhenoTest,
  getFc,
  getSignif
)
importFrom(stats,
  as.formula,
  cor,
  density,
  dist,
  hclust,
  median,
  model.matrix,
  na.exclude,
  p.adjust,
  pnorm,
  sd,
  setNames,
  window
)
importFrom(survival,
  Surv,
  cox.zph,
  coxph,
  survfit
)
importFrom(utils,
  browseURL,
  capture.output,
  memory.limit,
  read.delim,
  read.table,
  vignette,
  write.table
)
