f2588c27d519bd34b2480569709b5f72 *DESCRIPTION
2c3cacdab411b0d2f32d11ac2f92dcbd *NAMESPACE
f22ada003b1a806adb01bf6873501e9b *R/annotatr_data_doc.R
ec1036a9f3e346447581e2db98a23cf0 *R/annotatr_deprecated.R
35178a8a9a7ea3552eafdded82095133 *R/annotatr_package_doc.R
fb1d68c4964e87bc5f701ecc3d438846 *R/build_annotations.R
df301def8a865835811e2c7093d2f474 *R/build_txdb.R
9c504c36e93c6091f8c59507df35ab4c *R/cache.R
97a4eb7d7c518d7aea33cbd4c7ebd4f4 *R/intersect.R
acccdebb501dffbb5852a1f7f21a8589 *R/randomize.R
08cb6f7bfac3ca64e5451a4fe46cfe61 *R/read.R
ec409935b88211defa0c0c090ef7c53b *R/summarize.R
502ff007ed401a62ca3649e8f21980e9 *R/utils.R
567b79b7433c5db7dfc9eaf0ee0e6c7f *R/visualize.R
4b142579a406a5dd989e460cba09bb5b *build/vignette.rds
4dd6f8386db24713b88b1c770319ab6e *data/annotations.rda
ac2b10b0fc748466999e462b0640ad9a *inst/CITATION
9ba792fb83b88706caf4669ad302002a *inst/NEWS
2a14a363b5b0b3c61f05f3db407cf482 *inst/doc/annotatr-vignette.R
e7f8dc79b3b3b2a2890c32167f72d664 *inst/doc/annotatr-vignette.Rmd
a456312f074b68fd3eaac87e0df97dbd *inst/doc/annotatr-vignette.html
fed4a9edb1150d797c0163d4d5a0119d *inst/extdata/Gm12878_Ezh2_peak_annotations.txt.gz
70bfc837074aec2dffd69ba93bb271d2 *inst/extdata/Gm12878_Ezh2_sorted_scores.narrowPeak.gz
cb5c5f3301f220c56b26f4720134fc3c *inst/extdata/Gm12878_Stat3_chr2.bed.gz
494296664a2b901a048c898f453c2651 *inst/extdata/IDH2mut_v_NBM_multi_data_chr9.txt.gz
b8dadbe4e14e6fe2f8031d1ac877b976 *inst/extdata/K562_Cjun_peak_annotations.txt.gz
7367723da86cce42aefa8f7af17bab15 *inst/extdata/test_BED3.bed
eb405a8b7d705a07016c7dc6d0688313 *inst/extdata/test_BED4.bed
649d21ede4822991563aa96068578d26 *inst/extdata/test_BED5.bed
b8d7e23032b391ab3f13891340214ebc *inst/extdata/test_BED6.bed
a023bffd97b470093281d86ccb834981 *inst/extdata/test_annotation_nooverlap.bed
838213dae0d5efe1432125d0717d019c *inst/extdata/test_annotations_3.bed
750655c552d5b9aed4713f594a2b1e2e *inst/extdata/test_annotations_4.bed
aeacdfe0ddcb27537a36241a49223423 *inst/extdata/test_annotations_5.bed
c720f05968877a756c334e6e229033a6 *inst/extdata/test_annotations_6.bed
b7eac897074b6684ec987373f32d0660 *inst/extdata/test_annotations_6_gene.bed
16be7e568652b9c296f29eea19c8821f *inst/extdata/test_annotations_6_symbol.bed
2599eef777f61581fe45ae8e8c757169 *inst/extdata/test_annotations_6_tx_gene_symbol.bed
45a4768bfed51ecf3b1a2536272cea84 *inst/extdata/test_annotations_minoverlap.bed
cbfcdd53f60e4f67d5c146374b953543 *inst/extdata/test_bedGraph.bedGraph
28cde637d60e9888cb5a77ba96614c99 *inst/extdata/test_intersect.bed
41c84c319c0845bb29ab2616999fb3d3 *inst/extdata/test_read_multiple_data_nohead.bed
ceeba8dfa11e5cec33d8fd8928e5c51a *man/annotate_regions.Rd
1bd69b86161282b2e982afb5ba42be21 *man/annotations.Rd
4aca7ed85594a509033599e4e15956e3 *man/annotatr-deprecated.Rd
10f8beca150bc7d2396a2981720de1ce *man/annotatr.Rd
923e43c09bd0bf87ca84f03b15829290 *man/annotatr_cache.Rd
cb1b0c662a37481202b756da22f0aa95 *man/build_ah_annots.Rd
cd3fbcb14637776f8a459a3d1965c159 *man/build_annotations.Rd
191af658c25ec4810824d8a96f424bfd *man/build_ccre_annots.Rd
71c8978676247181b108a687c05681a8 *man/build_cpg_annots.Rd
6f6d62c60a048e23e5208d4ee032fd2a *man/build_enhancer_annots.Rd
1e2bd7020193f6b4ab7dfe3a031094a4 *man/build_gene_annots.Rd
e1c6afffbf20c92a8d984c2ff990be99 *man/build_hmm_annots.Rd
e3a47d9bbfb4ac9437318832bf8bbf1d *man/build_lncrna_annots.Rd
5eeebf56fab13f15864b224f678a3fee *man/build_mane_txdb.Rd
7067a42ecdeb0bdb6e559e22a2636ca3 *man/build_txdb_annotations.Rd
a60e11048ebe7a347598c62bca0ff727 *man/build_txdb_gene_annots.Rd
a13eaf9a0c8fb6d5730eec748f924846 *man/builtin_annotations.Rd
3fe087b3c6a07528a405caa795c955f9 *man/builtin_annotations_table.Rd
93bee877b20ab357794d8a971e88bb85 *man/builtin_genomes.Rd
80d55924dd0adac750fb5250a0df4b4f *man/cached-annotations.Rd
8b2904868f685125d0a20d26cafc9384 *man/check_annotations.Rd
d1c2afa5373da0a1b1fed299692a3b37 *man/check_regions_genome.Rd
d7379f24a61c637338b036592a81aac4 *man/clear_cached_annotations.Rd
1e2188ea7b49dd1fbe2c31d269ffe092 *man/coannotation_pairs.Rd
ca5477e90b05b8ebd15b0c770500ae0a *man/download_annotation_file.Rd
9fa681c4c5fd5d1cbe1b1f194dc179cf *man/expand_annotations.Rd
1b54df0e092cb5c3589ab9d61923a239 *man/get_annotation_rname.Rd
09c277369971ea2ac97c028cfda0c8a6 *man/get_bfc.Rd
9810b706e338711dabf968a13642af74 *man/get_cache_dir.Rd
c6135598a41a2749f737f4babe992a0d *man/get_cache_rids.Rd
af26624c5a144e7fe95d872ebbb1d5a6 *man/get_cellline_from_code.Rd
1f61c1c41c4c6ab63f1b7addfa9fdd5c *man/get_cellline_from_shortcut.Rd
cf92ff85e1fdb02ca2f0ff457df7f3db *man/get_chrom_aliases.Rd
f83bf1d64492fb4e723c9b4476f5a860 *man/get_genark_seqinfo.Rd
dadaf4b3573cfcf381ad7d6105a020c4 *man/get_genark_url.Rd
a6af6c86ff750e471baa66cce6920bda *man/get_gene_table.Rd
9c345bafdbfb6131f97103c5cc7399b7 *man/get_mane_summary.Rd
dec954e4f62d3e627576969d5794af9c *man/get_orgdb_name.Rd
9b03df3a81c6035b310bbf53e28fe24f *man/get_txdb_name.Rd
0c56f689f319a53f6fc9f2ca866e5b33 *man/list_cached_annotations.Rd
5fd52f6389290ee66d138d4dbb4658e5 *man/load_cached_annotation.Rd
1d9d999b1c1658c3de58363b59e7d7b1 *man/plot_annotation.Rd
9d3342934eef850f121daa31af015039 *man/plot_categorical.Rd
29964aa91e5360db6b4770e550ce5038 *man/plot_coannotations.Rd
67915ae0f79fe7d43b69bd05969000af *man/plot_numerical.Rd
88bdbdcab67019248c38249690ec2848 *man/plot_numerical_coannotations.Rd
b1bb7d70dd5f8d060b22cd15984288d0 *man/randomize_regions.Rd
4bbb9dae95c3b5be0ac11dbb07d1e913 *man/read_annotations.Rd
b68aa8dcd8e30cb66d9698cdc423ee1e *man/read_ccre_bed.Rd
305469978178539919fca194f7be2165 *man/read_regions.Rd
7abe4ad40a017ba84ce68afe559a90d1 *man/reformat_hmm_codes.Rd
43fad4d90f28c121cc7fa6d9644cedbf *man/save_cached_annotation.Rd
3a3da0d9c4009cb9b2163e6a7d24fe22 *man/set_genome_seqinfo.Rd
30d8c692d9057c78cc6b1df4f62c1cce *man/standardize_mcols.Rd
e044f1f040230fd168ee80debde0f71b *man/strip_id_version.Rd
9f0884a46ce825a304805c2f46a58b96 *man/subset_order_tbl.Rd
da550a6a432c8331bb97634cda342c88 *man/summarize_annotations.Rd
63e622689865ef12e7bfa5da4c05564f *man/summarize_categorical.Rd
851db0ac8c7e8796dde58b500c194ea2 *man/summarize_genes.Rd
2e5835ddedefacba90b400e21a56d8bc *man/summarize_numerical.Rd
9c5e2685fc5f0ba5aedaae2ba67255bc *man/tidy_annotations.Rd
db854d62d512e65d05095c6c252399fd *man/ucsc_seqlevels.Rd
489854a98bd84d030cdd2f01ecc52b08 *tests/testthat.R
15a414c649385192616789f761e1991b *tests/testthat/helper-fixtures.R
32fc00c57d695b67289dd513d0f2c118 *tests/testthat/test-annotate.R
b9884ba3a2a0df03f16bbafd46549c7a *tests/testthat/test-build-annotations.R
93415fd64880088588c0786ecb923cc3 *tests/testthat/test-build-txdb.R
181fd4c65f03c4177ae66abdf1f84d48 *tests/testthat/test-cache.R
03a5df79917cdf9419ca2c06219fb339 *tests/testthat/test-randomize.R
0986409a00bfaa54bf2302ff63b4e9e1 *tests/testthat/test-read.R
1008c65e71aff797e04213918226eb58 *tests/testthat/test-summarize-genes.R
f6dff58c15a5b564c97675950570a6c1 *tests/testthat/test-summarize.R
2f178286cb011198a58bc7ae146bc7ce *tests/testthat/test-utils.R
7d3b9d2b39eb757af4f75cb59f0816d8 *tests/testthat/test-visualize.R
e7f8dc79b3b3b2a2890c32167f72d664 *vignettes/annotatr-vignette.Rmd
9027b49090838657bcdc4783a7a9912a *vignettes/annotatr_cpgs.jpeg
34767cb0495a65aaafa0e691cf805433 *vignettes/annotatr_genes.jpeg
