Package: ReactomePA
Type: Package
Title: Reactome Pathway Analysis
Version: 1.99.2
Authors@R: c(person(given = "Guangchuang", family = "Yu",
	   	    email = "guangchuangyu@gmail.com",
		    role  = c("aut", "cre")),
	     person(given = "Vladislav", family = "Petyuk",
	     	    email = "petyuk@gmail.com",
		    role  = "ctb"))
Maintainer: Guangchuang Yu <guangchuangyu@gmail.com>
Description: This package provides functions for pathway analysis based on
    REACTOME pathway database. It implements enrichment analysis, gene set
    enrichment analysis, network-based enrichment analysis (NSEA) on the
    Reactome reaction graph, Bayesian term selection, weighted enrichment,
    and several functions for visualization.
    This package is not affiliated with the Reactome team.
Depends: R (>= 3.4.0)
Imports: AnnotationDbi, enrichplot, enrichit (>= 0.2.2), ggplot2 (>=
        3.3.5), ggraph, reactome.db, igraph, graphite, gson, Matrix,
        utils, yulab.utils (>= 0.1.5)
Suggests: clusterProfiler, knitr, rmarkdown, org.Hs.eg.db, prettydoc,
        testthat
VignetteBuilder: knitr
ByteCompile: true
License: GPL-2
URL: https://yulab-smu.top/contribution-knowledge-mining/
BugReports: https://github.com/GuangchuangYu/ReactomePA/issues
Packaged: 2026-09-24 23:43:18 UTC; biocbuild
biocViews: Pathways, Visualization, Annotation, MultipleComparison,
        GeneSetEnrichment, Reactome
Encoding: UTF-8
Config/roxygen2/version: 8.1.0
git_url: https://git.bioconductor.org/packages/ReactomePA
git_branch: devel
git_last_commit: e295d30
git_last_commit_date: 2026-09-23
Repository: Bioconductor 3.24
Date/Publication: 2026-09-24
NeedsCompilation: no
Author: Guangchuang Yu [aut, cre],
  Vladislav Petyuk [ctb]
