9381b28762f18f067e02bdfe5d25092c *DESCRIPTION
c832f63b51565a4a7c78f56d0a950172 *NAMESPACE
74a3ae293f155795dd5788d1000868a7 *NEWS.md
1894aa137ddb3ad7237cc5aa74bd909e *R/analysis_wrappers_v14.R
88fed0543fd900652226e87befff3151 *R/plotting_v17.R
01dc09804a0b821411741a9c80672038 *R/utils_v12.R
96d0602706c44c920817b970ebafe2b1 *build/vignette.rds
cd1ea039d545d307907918aa1d3898eb *inst/doc/PostChicago_v19.R
8237f6faf6d1a3a0fdd6d7e01409e2af *inst/doc/PostChicago_v19.Rmd
08909bdbcfa8f7c882960fe520176bed *inst/doc/PostChicago_v19.html
ccf1a513d382b3f30e8eb905ede83637 *inst/extdata/dataPath/RA_0h_rep1.chinput
7b9c6ab34351ee17e6aa9bf2fcf28d80 *inst/extdata/dataPath/RA_0h_rep2.chinput
8120f07f703338a8b944d9fab9878c6f *inst/extdata/dataPath/RA_72h_rep1.chinput
78ebb32c604a6e329dca62317d2a796d *inst/extdata/dataPath/RA_72h_rep2.chinput
885bb874684124373d68342db32910dd *inst/extdata/designDir/DpnII.mm10.chr11.Hoxb3.rmap
8d23e3e35ec0fbdd7fb73f13f15e1ad7 *inst/extdata/designDir/My.baitmap
55f5fa70425905769227ccf6af052ab2 *inst/extdata/intervals/K27ac_peaks.bed
67e1796c609a0824300b0a00fb0448ce *inst/extdata/intervals/K27me3_peaks.bed
33563678b2cb8608ccfebeacc0e2592e *inst/extdata/postchicago/ints_all.txt
2018894ec3bdd05b05c76ed1dbda174e *inst/extdata/results/cd_RA_0h.rds
82d9ff08d9ccc950fd22b43dbb0ab123 *inst/extdata/results/cd_RA_0h_rep1.rds
15f223a611efd1ec8dae3e272e361b08 *inst/extdata/results/cd_RA_0h_rep2.rds
4de45f65b004e0294d0cdb819c1f12db *inst/extdata/results/cd_RA_72h.rds
7681012b5978de6c272da84ba6010618 *inst/extdata/results/cd_RA_72h_rep1.rds
abe6262c2c238a16ef920b50f2d336a2 *inst/extdata/results/cd_RA_72h_rep2.rds
97eb9390f44e8e04b7167888f2efa3c9 *inst/extdata/results/fnreadsPerBait
d302b8d26117341c6c7aef2ebd2c1f99 *inst/extdata/results/gDistrTotIntsPerBait
4c614388896e937096fb69909442d635 *inst/extdata/results/hSigIntsPerBait
415ddfd56d6ced3cc5005bab2e1cfdf4 *inst/extdata/results/iDistReadsPerSigIntPerBait
85655000daea521c7325143be6351cf8 *man/PostChicago-package.Rd
8d2249e5f6429e691907659156857ee8 *man/aggregatePeaks.Rd
0607ac92946a04225fd26706dbd4d814 *man/aggregatePeaks_regions.Rd
e352949ecbef8af55ae600ea03c60654 *man/annotateInts.Rd
cc8ed706a9574d2bd3f984434706d47d *man/baitmap2baited_genes.Rd
0cbd1a051bef297fdc159d9fec008731 *man/boxplotsCapC.Rd
e49b77f6415a8ada7d6f65fd9432e1e1 *man/getMatrix.Rd
446d313b47d9442e179bb8e211548e67 *man/loadCdList.Rd
a25c1350074661ec2540c6adada2f285 *man/loadGrl.Rd
e9b586b70f3e0e48ec335a4a5660229f *man/makeBedGraphs.Rd
98b4fd2c0a1f7acafad4efa843cd0c28 *man/makeIntsTable.Rd
3a766f8c1cf21df4327b9a7a7df1bf38 *man/makeOneGeneOnePeak.Rd
576c34c26e875d314e4fe5dc41cf5282 *man/makeQCplots.Rd
41534aa10e02fd53bb2b1055563d5bf9 *man/plotAggregatePeaks.Rd
888858519d24b68e6b71c801f3c826c7 *man/plotInteractions.Rd
c6684ef7f42f3aef5afbf15f9237a55b *man/plotStats.Rd
be725649db154419d480a9f2892c6a4f *man/quantifyWithinPeaks.Rd
b1d4d550af5fe206afea422eb263bc61 *man/rmap2rmapgr.Rd
5ab78716d5b243a4a1e3c1e2304a8442 *man/runChicagoForPostChicago.Rd
8237f6faf6d1a3a0fdd6d7e01409e2af *vignettes/PostChicago_v19.Rmd
