Package: MultiAssaySpatialExperiment
Version: 0.99.12
Date: 2026-08-30
Title: Multi-Assay Experiment with Spatial Context
Description: Extends MultiAssayExperiment with spatial context elements
    (images, labels, points, shapes) for integrative analysis of spatially
    resolved multi-omics data. Supports coercion to and from
    SpatialExperiment and SpatialFeatureExperiment.
Authors@R: 
    c(
        person("Patrick", "Aboyoun", role=c("aut", "cre"), email="aboyounp@gene.com"),
        person("Genentech, Inc.", role="cph")
    )
License: MIT + file LICENSE
URL: https://github.com/Genentech/MultiAssaySpatialExperiment
BugReports: https://github.com/Genentech/MultiAssaySpatialExperiment/issues
Encoding: UTF-8
Depends: R (>= 4.6.0), methods, MultiAssayExperiment
Imports: tools, BiocGenerics, BiocParallel, S4Vectors, MatrixGenerics,
        SummarizedExperiment, SingleCellExperiment, SpatialExperiment,
        sf
Suggests: knitr, rmarkdown, BiocStyle, testthat, arrow, DropletUtils,
        jsonlite, sfarrow, terra, ggplot2, Matrix, RBioFormats,
        SpatialFeatureExperiment, spdep, zellkonverter
biocViews: Infrastructure, DataRepresentation, Spatial
VignetteBuilder: knitr
Collate: 'SpatialGenerics.R' 'SpatialLayerList-class.R'
        'MultiAssaySpatialExperiment-class.R'
        'MultiAssaySpatialExperiment-SpatialExperiment.R'
        'MultiAssaySpatialExperiment-SpatialFeatureExperiment.R'
        'MultiAssaySpatialExperiment-combine.R'
        'MultiAssaySpatialExperiment-spatialMap.R'
        'MultiAssaySpatialExperiment-helpers.R'
        'MultiAssaySpatialExperiment-package.R'
        'MultiAssaySpatialExperiment-read-components.R'
        'MultiAssaySpatialExperiment-read-config.R'
        'MultiAssaySpatialExperiment-read-cosmx.R'
        'MultiAssaySpatialExperiment-read-generics.R'
        'MultiAssaySpatialExperiment-read-helpers.R'
        'MultiAssaySpatialExperiment-read-merscope.R'
        'MultiAssaySpatialExperiment-read-visium.R'
        'MultiAssaySpatialExperiment-read-visiumhd.R'
        'MultiAssaySpatialExperiment-read-xenium.R'
        'MultiAssaySpatialExperiment-subset.R' 'spatial-aggregate.R'
        'spatial-annotate.R' 'spatial-operations.R'
        'spatial-raster-convert.R' 'zzz.R'
Config/roxygen2/version: 8.1.0
git_url:
        https://git.bioconductor.org/packages/MultiAssaySpatialExperiment
git_branch: devel
git_last_commit: 02ad073
git_last_commit_date: 2026-08-30
Repository: Bioconductor 3.24
Date/Publication: 2026-09-02
NeedsCompilation: no
Packaged: 2026-09-02 23:04:36 UTC; biocbuild
Author: Patrick Aboyoun [aut, cre],
  Genentech, Inc. [cph]
Maintainer: Patrick Aboyoun <aboyounp@gene.com>
