b7c903f56a96d825df3b7fb70dab9791 *DESCRIPTION
d4fa912dff60c6ca329bcf63cb28166b *NAMESPACE
17a5a6986ca2b67c6f80e1e071d33799 *R/ExperimentalDesignSimulation.R
7d337b73afd8b2d2e2b9e3867b81a982 *R/Fit_Isotonic_Regression.R
9d516d1079a4374f4c6e9d29b779bb33 *R/IC50_prediction.R
10d2b3514c4d8313ed333134912b862e *R/IC50_prediction_datatable.R
1da013b9e42b82c68d17066557f5c514 *R/PredictIC50.R
0acb400ac58bee2dfe3f84a60c885000 *R/PrepareData.R
ce52474ec9d12378931d9b4fd1d2315b *R/TPR_Power_Curve.R
ece3f154385d5c635b7f65e219ece56f *R/Utils.R
c7ffccb4db0a6aa14518c542368ac1bc *R/Visualize_Isotonic_Fit.R
01c4d2f1e1a7a2676ecbe16081035e5b *R/data-DIA_MSstats_Normalized.R
292abecaef3e4716867dfd93eff09b1b *R/protein_turnover_ratio_helper.R
065989ee73293ab94786a97668c29c18 *README.md
2f31779872b687909a437766da3b4a2d *build/vignette.rds
b326b874886d9cca55ad371d8dbe9f1e *data/DIA_MSstats_Normalized.rda
55021799ff77f83899cf173da724680a *data/datalist
64be471e521aa7e9babf02498fd84fb7 *inst/NEWS.Rd
597f0f37dc0c6dd86d78ec2630f651e8 *inst/doc/MSstatsResponse.R
9a8e3e599461359a13713b93ab89845a *inst/doc/MSstatsResponse.Rmd
f734878cda1427802a59e8fda160e12a *inst/doc/MSstatsResponse.html
8cc5591fcc6fbb3577db1fac0e490f9a *inst/extdata/DIA_MSstats_Normalized.RDS
6d4069faaee9ee13f0b5d2396de2dd34 *inst/extdata/template1.RDS
eac369522f354fee6b29b23d2e0c045b *inst/extdata/template3.RDS
96ef20d63e328fbfe3a47c06350f1f55 *man/DIA_MSstats_Normalized.Rd
3c1132f165b4e920cd1969274345588f *man/MSstatsPrepareDoseResponseFit.Rd
85f6a439e7cd2685cee75eac8acfd868 *man/PredictIC50.Rd
0965babcb9581a37765d3211bddc536b *man/bootstrapIC50.Rd
14b6709e728c58630fc5dba3c616b05c *man/bootstrapIC50LogScale.Rd
5490f3b43ec5dce436cf5528ff81167c *man/bootstrapIC50Precalculated.Rd
0c9a8692b6ba452d2364121d3fd30014 *man/calculateConfidence.Rd
2df8643b6981c373b9d9f836fff04219 *man/calculatePeptideWeights.Rd
b94fa7a6cb0bbeb0c38883ce46210de0 *man/calculateQCScore.Rd
8bc8009fcb8a8b81400a4e4be72f59a3 *man/calculateTurnoverRatios.Rd
89743b6e96622c9ab6b44f838b498eff *man/classifyTurnoverProteins.Rd
bfa9141e9843fb0a6f49b82b7b5387b5 *man/convertGroupToNumericDose.Rd
d94608d6cb48a9227867298e6b5b3183 *man/doseResponseFit.Rd
a931cd85b7eca285ca7ad7c50477af6f *man/dot-extractTemplatesFromData.Rd
d04320c72ede3d5d4734f9b1359ad929 *man/fitIsotonicRegression.Rd
65f5a0fff1ef31a55db4ac6027b7b117 *man/futureExperimentSimulation.Rd
8072aae7f8567cd9b1a10450ef2aae20 *man/kendall_monotonicity.Rd
c53c59479f0963c120bc56b9a8e6ec3d *man/parse_timepoint.Rd
b8db3128ea20b629d6f74eb6c575c958 *man/plotHitRateMSstatsResponse.Rd
eb2d9927ff04631601321323ab1211dd *man/plotIsotonic.Rd
51116f7c00d9ea6a02405dfbdf158dcd *man/plot_tpr_power_curve.Rd
69f955b70f8c16668e9b779a1e2b3116 *man/predictIC50Parallel.Rd
3695957cbe019c143bcb957f83e5ba28 *man/run_tpr_simulation.Rd
be7cba0572d8f982be3e004827c8a69d *man/simulateChemoProteinLevelNonParametric.Rd
c416a25831a6221ce75d95d83b250032 *man/visualizeResponseProtein.Rd
21915f163b5d94f0fe59666cfbcd37ff *tests/testthat.R
88bfbeff24fa90738da470953ff55680 *tests/testthat/test-ExperimentalDesignSimulation.R
c0b171eab1e5a5f3b598db503474cc63 *tests/testthat/test-IC50_prediction.R
b15ee2183e5c51169064cf77c2557ff6 *tests/testthat/test-PredictIC50.R
8770e7079697708d35bf6e02342a4223 *tests/testthat/test-PrepareData.R
9b19a8fc58215d23c1400069854ae727 *tests/testthat/test-TPR_Power_Curve.R
acb92b3fab1c2fe0505354804ff1c471 *tests/testthat/test-Visualize_Isotonic_Fit.R
4ae11e5279ff7db01a1c65de336c923a *tests/testthat/test-protein_turnover_ratio_helper.R
fe9ecaa24e75b94977a915694122592d *tests/testthat/test_Isotonic_Regression.R
9a8e3e599461359a13713b93ab89845a *vignettes/MSstatsResponse.Rmd
