0629ba84220e40f36720f9ac566cf863 *DESCRIPTION
967e4d8d04ddcde21860a24730dd206b *LICENSE
72ba641f9450b7bb6d40a77d538125b8 *NAMESPACE
448f17ef1e66315bb34a58c3a120df81 *NEWS.md
86efb2ea4324d2f65b810284c4588f21 *R/LIPIDIFy-package.R
70fb21673e994b5509956ada4e036ba4 *R/analysis.R
79359cf9cbe25d360a5d756d23cf975f *R/generate_data.R
b9402e83bde282d92a524f9a09f00085 *R/shiny_app.R
709b1034a9a4ebbd83d014c0e1fdbadd *R/utils.R
8e60b7a5ccc17ff228e3c762c2652282 *R/visualization.R
f3b4d989ba1bdaea632f15d65c0ef8e9 *R/zzz.R
b08a50396a0d436f0fa3f2b366e2db3b *README.md
463199668f041bb7dfea4d1ad8e979ec *build/vignette.rds
fcc9912cb9a52fc68e7f4882e63b688f *inst/doc/LIPIDIFy.R
22f82a6152a92deaa72604dc4875b74e *inst/doc/LIPIDIFy.Rmd
5af2f771319ed96eb9f66a1faf31b615 *inst/doc/LIPIDIFy.html
3614d44f5f3350c0405ebab7c1d6592d *inst/extdata/ST001359_lipidomics.csv
5eb5085d6da3039efdbb1520c64e73ca *inst/scripts/demo_lipidomics.R
3c2f1d5f930786b6400951314e61eb94 *inst/scripts/prepare_ST001359_lipidomics.R
a9d0a17f5b8625e42c569e879603e3b4 *inst/www/welcome.md
a14622f4f871f468b5b61c93c9fea0f7 *man/LIPIDIFy-package.Rd
ca04af3b7b834e64e11cedaea117ef40 *man/apply_normalizations.Rd
dd6c6f8bf375136411489fec9d8bcb3c *man/classify_lipids.Rd
61962f4bcdda27d07f2252053ae8b9cf *man/correct_batch_effects.Rd
cb650317a4a3ff8243f0b7bacf7628cd *man/create_default_contrasts.Rd
9aab206642b150b190039dac15e8cb59 *man/create_enrichment_barplot.Rd
bf5784b979db9fbde2a6f13f6b843d57 *man/create_enrichment_dotplot.Rd
7cef0a87f80633c4398e9575e34de5f3 *man/create_heatmap_robust.Rd
3461b0925c7631fc1662d6c5d6857560 *man/create_lipid_expression_barplot.Rd
60fc5f33c85eecbc83f257e3852bd7a9 *man/create_pca_plot_with_ellipses.Rd
7a1d10b180cebab096e1c8627281ba17 *man/create_pipeline_plot.Rd
2666802729f2a1336aba3fa95634d6a6 *man/create_plsda_plot_with_ellipses.Rd
5f8ec28eb71b3773813af4a5d24bd2ca *man/create_volcano_plot_labeled.Rd
1eb31b01c43586954c445142926afca2 *man/determine_saturation.Rd
48c07171559cce5f53312ab66cd69bf6 *man/export_classification.Rd
a4a97df2a285453ed2ef696a3cc2bec4 *man/fix_sample_alignment.Rd
f89e246748c06f769599c6b87fed24e7 *man/generate_example_data.Rd
e4aa8dba67042c5148daa86b2eb98e6d *man/get_imputation_descriptions.Rd
c3449868b2a5c7f40bf9b2e13a1efe67 *man/get_imputation_methods.Rd
af52de70d891df0eb76d76fde1a31451 *man/get_normalization_descriptions.Rd
956f8b46dae6fbb52769803f5fd7836e *man/get_normalization_methods.Rd
d1b2dbb8f22051103557dfa16b79151e *man/impute_missing_values.Rd
301eb7954222687ad3f5b5ae2019e44b *man/launch_lipidomics_app.Rd
65daeda7cebb17347288f83b1dffd0b5 *man/load_custom_classification.Rd
16b11f0a57089c9551f96ac68ad69d50 *man/load_custom_enrichment_sets.Rd
1a28839c79dd8adab79ce2867a2c55e0 *man/load_lipidomics_data.Rd
9e08f7bee8169137a9941d51a68fbbcf *man/load_lipidomics_data_from_df.Rd
d7fb7b7c932f076b229b4c77c96269f2 *man/normalize_log2median.Rd
82075c7b668246814380733e6ff1fe3f *man/normalize_mean.Rd
9c869fc9d744c31533917dcdd6abfc94 *man/normalize_median.Rd
3019530ab2a8cd73fe9495c5bb31c54c *man/normalize_pqn.Rd
5eedfd6a0e407eb57c62e26f3edd9d21 *man/normalize_quantile.Rd
3a3e44cca379e6db1abda628d331d133 *man/normalize_tic.Rd
2414d8d86cbcaea3ec8b24a1e565ee61 *man/normalize_vsn.Rd
ecba6187baa98f72240b0fb724b5426e *man/perform_differential_analysis.Rd
8fcc018f47b77bc39a578c137c1ca9ac *man/perform_enrichment_analysis.Rd
885eacbf58af6e14dee0431aa5d29b0e *man/perform_pca.Rd
60efa9a9e532999b0a1fe7d3cb875c41 *man/perform_plsda.Rd
5ba259ea35d2f41a5561cf2b35959183 *man/test_saturation_classification.Rd
de9ef51eeb08c45b126d36beb9ff1b9f *man/visualize_raw_data.Rd
5d692b214338fc5a003d831944fd4878 *man/visualize_raw_data_improved.Rd
c0be3368ea3786f4fa4cf14431f29151 *tests/testthat.R
68b329da9893e34099c7d8ad5cb9c940 *tests/testthat/README.md
52c1295ca892d99908571055ae499d37 *tests/testthat/test-analysis.R
6593aa679b3e4af53355de97ceac8c0e *tests/testthat/test-normalization.R
099a160808d42745297c2be42f24d388 *tests/testthat/test-orientation-topn.R
8d1e587a160ac5a1ef21ce86d08936d9 *tests/testthat/test-report-escaping.R
9286d21bcffe542876a2d1783510b760 *tests/testthat/test-shiny-server.R
144b682d6c71b3b626d2a9f0e35f1240 *tests/testthat/test-shinytest2.R
d4285d1bc7f1e5487b933e82a5458dc0 *tests/testthat/test-utils.R
f8115cb60a3ef55f4a6c1fa574e411d8 *tests/testthat/test-visualization.R
cad4b87204130143fedbce151c56b770 *tests/testthat/test-vsn-normalization.R
22f82a6152a92deaa72604dc4875b74e *vignettes/LIPIDIFy.Rmd
