dccc809a4a371c19c8177b0559c4c656 *DESCRIPTION
d4350935d762be365154ea6d287a65df *LICENSE
8f75d22852f679525047e041313fc7ff *NAMESPACE
f9d0dfeaa61dfed023640685f94b8ad4 *NEWS.md
2aaf212d18db25bcaafe29cdea7b88cc *R/CySA-package.R
9b76918cccf185d4931655d94dd45366 *R/clusterSelector.R
2f3e575f3c07a3bb20593f881df9c907 *R/example_data.R
6daf920edf6d5ed53d836442c6cfb7ea *R/interface_clusterSelector.R
ec5277856a48d5fe9e1783e9e25c22eb *R/observers_clusterSelector.R
774f60a1c10cf69436b5322880c7cb0c *R/outputs_clusterSelector.R
f8230695ad0d50f1a62a4f7b49404403 *R/plot-helpers.R
8d0eb136ff5629561b080dac4039e0ef *R/plotCytoScatter.R
d1817acb958e3304f069d3a1f5042c4b *R/plotSOMScatter.R
2afccc6b79891ee59ec2d73847abee4d *R/prepClusterSelector.R
997f70509379666f66a1f0ed923595cc *R/server-helpers.R
05baa91879ba7c7f2974453c7937127b *R/server-reactive-helpers.R
95ea4f75fc5f3ec136c9c714168da23b *R/server_clusterSelector.R
90c25d87a533fba95180fbf868de324f *R/shinyAppFunctions.R
81da798aae2ed12e6bd0b145857c8049 *R/utils_clusterSelector.R
eafc6fa1dfb1f636a27e4db0a7260b75 *R/validate-inputs.R
a555c05139d82d5044ba5011a2700e8a *README.md
15c46956452b11209327cb9b50472839 *build/vignette.rds
410c22d5797e22b54f67d25701094156 *inst/doc/intro.R
49f65156e91d377015112bc24dd0b4d0 *inst/doc/intro.Rmd
ddfc4193c4ef1a4b862e773db1e9e8bc *inst/doc/intro.html
851be40517f6334b130801e80afd1256 *man/CySA-package.Rd
672f45be764008c8d316481e015069b1 *man/CySA_default_cluster_cols.Rd
289661dea38a950c7c5b049b3667bf5f *man/CySA_example_sce.Rd
441f88986c090305608bc971f278b606 *man/INTERNAL_buildClusterSelectorApp.Rd
b3550cf19c6cf21d86c7d08d2fb1109c *man/INTERNAL_registerClusterSelectorObservers.Rd
d7393a5bfae11f7d34acbbebbc932a13 *man/INTERNAL_registerClusterSelectorOutputs.Rd
548fd9889afbf2260905d726244e50ce *man/buildProjectionDf.Rd
a959764751f8d904710fb4561bd274c8 *man/clusterSelector.Rd
ca4a64f3781cb6a171912831b786782a *man/dot-applySelectMode.Rd
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af7fe33f0e163989c286af72916b9761 *man/dot-buildClusterSelectorServer.Rd
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6453f6297181ad64781d7d7b1ead5e66 *man/dot-buildDendTable.Rd
5f44502ad160085e28c90b0efcbb2009 *man/dot-buildDimRedReactives.Rd
86373aa2e69b0df978cd92d8a93f8592 *man/dot-buildFirstBodyRow.Rd
b870f997f48fff89aa777126a5098002 *man/dot-buildFlowSOMPieBox.Rd
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becdb9ccbade33849d9c2cd289286f63 *man/dot-buildFlowSOMStarsBox.Rd
5b7412373bb40afd55fb7f6830d7464f *man/dot-buildSOM2DPlotsBox.Rd
160f8c43a5b2b52268eb9f3c62dc88ec *man/dot-buildSOMClusterStats.Rd
f6a0269dc0f6bf9041f7a5814f1ffc4b *man/dot-buildSOMCodes.Rd
abd055a046c62faecbc2315142e9d040 *man/dot-buildSOMDataObservers.Rd
0c9043cf0b35935ee129afb0dcf98509 *man/dot-buildSOMRasterBox.Rd
c16f8ab796bb9da757cf0e4451a84499 *man/dot-buildSOMRasterData.Rd
8bd4554db9091ce37ba5fd68727d890a *man/dot-buildSOMRasterSelectPlot.Rd
e34e835b863c63659118cab8bc4bedec *man/dot-buildSOMStats.Rd
0af235586782e8b15f408f8058187af4 *man/dot-buildSelectionObserver.Rd
a006d38934ec8e28d028ce84fc3e9125 *man/dot-buildSixStaticSOMBox.Rd
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b37752aa4e136841ad6e017331fe4e6f *man/dot-buildUpSetBox.Rd
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42c4a1727bf63b088f9c1b742cf62443 *man/dot-buildZoomObservers.Rd
f7bba5717b871b4ebf61107a97a610b2 *man/dot-computeRelativeCounts.Rd
07cf51439022a81d15b0ef523947b714 *man/dot-computeScatterLimits.Rd
58f3c9cfa21bc668cbb3b6bd3d0f5071 *man/dot-defaultDList.Rd
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4a60d886b410f71ae69597bb7e2da7fa *man/dot-isDendrogramLeaf.Rd
da01388e6f87b70e3bf55666ce75a683 *man/dot-nDendrogramLeaves.Rd
65f5d87bfc52414d5d3e07c765f26a09 *man/dot-rebuildOutputList.Rd
25ecb69e0f5672d2f0eb318f4361ac5f *man/dot-updateOutputListInputs.Rd
8e862f1058fe921064a571daa247be0d *man/dot-validateClusterSelectorInputs.Rd
1796946b468b6ae2255d4e33d06f154f *man/dot-writeClusterSelectorPdf.Rd
45b586f1e8b5c1194fb9e0e7ffe47b7f *man/figures/README-2d-plot.png
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6cffc18b59b425c14c0e3adeab096a97 *man/plotCytoScatter.Rd
1426efa38202e9f3e37fdbfa7ab473da *man/plotSOMScatter.Rd
5dfcd11323117e341f1d6f3732c7b14e *man/prepClusterSelector.Rd
f9775452df9bd6e722cebcf9352d8531 *man/prepClusterSelectorData.Rd
da778a2328c0caa319a751cc60234079 *tests/testthat.R
e26a070bac94183f1cd6420020adf32d *tests/testthat/setup-clusterSelector.R
5974a64fca24f182e3dd92a9bb37c6a0 *tests/testthat/test-CySA.R
7a10c2ce5079daeb8065fa5b2b211867 *tests/testthat/test-clusterSelector-server.R
a47dc55cd3c5780e5b9706ff22f6617b *tests/testthat/test-clusterSelector.R
838636d0f7035ef5c961d31c3d0710ed *tests/testthat/test-downloadPlots.R
b3589cd2922a14d02c39bf2d8fa7ac72 *tests/testthat/test-example-data.R
40ef726cbf69a605ffcfea6a96f2796e *tests/testthat/test-observers-coverage.R
dc994ca739dbcf8d3864b76fb76a6aec *tests/testthat/test-observers.R
001735d0d293f0800994b9549702e53c *tests/testthat/test-outputs_clusterSelector-gaps.R
f1cff0181a41ffeed712f2e841735dd4 *tests/testthat/test-plotting-extra.R
f060fc8500f3a334b1fb865e2d6ea35d *tests/testthat/test-plotting.R
d4182f734b1e175411944ac853355405 *tests/testthat/test-prepClusterSelector.R
6ab88fb516928fb54346ff490b259607 *tests/testthat/test-prepClusterSelectorData.R
793f3e9476a1c3856e27c9e672000b5f *tests/testthat/test-server-helpers.R
9122a6236ed5b162b46737f723913653 *tests/testthat/test-server-reactive-helpers.R
0a9b561312b6df56a09200506daa1a9b *tests/testthat/test-shinyAppFunctions.R
006cbcd2dfe493ec6cdf37949041111d *tests/testthat/test-smoke.R
eaf2d1fd8db32ed1701f1ac35e653e08 *tests/testthat/test-validation.R
e3b1f4828628cdd2d13520e93608a3b9 *tests/testthat/tests-claude.R
49f65156e91d377015112bc24dd0b4d0 *vignettes/intro.Rmd
e3fb5233c62fd89196ff8fa82a0511fc *vignettes/perf-analysis.md
