ffaa6f444eefd6203f0b9cd4dfb895b6 *DESCRIPTION
ac24debfaf518b077b78daaf0f0a5e22 *NAMESPACE
cf6525aa0726e04efae45c97cb5feff2 *NEWS.md
66f191ea42f7599fab5ff21946b203d7 *R/RcppExports.R
e45771549f37c4894a81f7c3d306c812 *R/celltypeTargets.R
be851f6f0786ac089fe1cf604df758a9 *R/dataWholeBlood.R
d527572fe8c150e037d98815e7dd1a85 *R/majorCellTypes.R
1ff2c9ecab8a78908bd90d5e8017562a *R/panDB.R
76352fb60d0280a9c9a7c7c58f7795a2 *R/plots.R
63be895950ea051260e06247333caa10 *R/solvers.R
86a283f24e4b7435e8a9c4be1d0164c5 *R/utils.R
e1030e7895e29407b946cc7c57921548 *R/xCell.R
694fe6843f52fb74a2fbfddeaba59772 *R/zzz.R
4b15a234e590f498251dca6b248b15b5 *README.md
3dc045716b3909b7eb4b39f6f76ece64 *build/vignette.rds
31e512ceb3e0362e60f892c27d489225 *data/celltypeTargets.rda
c18954834f7a764728f74823746c6cd7 *data/dataWholeBlood.rda
658626997bdda362f18610795ea46de2 *data/datalist
095c3adf80ca9f116d7883d17c9637de *data/majorCellTypes.rda
fe8563d92920ebebb1e18d2d2017f47b *data/panDB.rda
5ad867565880d1a68444a6c396a863f4 *data/xCell.rda
cb6385849e57d42a6ec580df1ff659a0 *inst/doc/comparing_clampbase_clampfull.R
b80cc27e0fd18f6d795013e81da77e02 *inst/doc/comparing_clampbase_clampfull.Rmd
c370115b14f82ca468817fc67dc2146a *inst/doc/comparing_clampbase_clampfull.html
936b11f925191c134f91b7c77a22d562 *inst/doc/get_started.R
b79e369b6b30231739d9410801636a39 *inst/doc/get_started.Rmd
f1563ce2d934ec7bb15a43813db7bbe9 *inst/doc/get_started.html
20b91e751148bb99d116b204ba7db63c *inst/extdata/CellMarker_2024.rds
3571cb62015ae454bf86c2cd7a817371 *inst/extdata/Diabetes_Perturbations_GEO_2022.rds
c394b5f4a44c305653907a012ab1449a *inst/extdata/GO_Biological_Process_2025.rds
a259adf988e8127333a4e058a2018117 *inst/extdata/GTEx_Tissues_V8_2023.rds
1ae50f75b04e01afb3947cb5b466396b *inst/extdata/KEGG_2021_Human.rds
ef025bb842e393095730d41ac974417e *inst/extdata/MSigDB_Hallmark_2020.rds
a1f4e351129e6a365fbdf7fc0c885d25 *inst/scripts/fetch_vignette_gmts.R
6c3186dd3491daaf1fdb91ae5417e1ba *man/AUC.Rd
bfeba94e630ddd31d2357195d3d1a67e *man/BH.Rd
7fb43423531c779e4f867a03ea3de46d *man/CLAMPbase.Rd
924e7814541463da7ba3910af272825f *man/CLAMPdotplot.Rd
5cbc67e4a11ece2588c9d8b4ceaea943 *man/CLAMPdotplotAll.Rd
756a712ed7b5f4c0a5edd4ed0085bfbd *man/CLAMPfull.Rd
ec2e1318d08c9c575d9988d74549a2fd *man/CLAMPfullnVP.Rd
5433d0d96c8a15b49ec644542870f6db *man/CLAMPplotTopZ.Rd
6bcbe9dd765f3d9948aed689a16ec0ce *man/CLAMPplotU.Rd
5df55bb905c80408c1652e49208e1af9 *man/allAgainstAllAUCs.Rd
80189bc0316d27cad8a270bbfbcd1a27 *man/binarizeTop.Rd
84c37955071fe76050286ed34de7c686 *man/celltypeTargets.Rd
db97c08d07bab906f8d7aa19bce494fa *man/cleanFBM.Rd
d6e6e80ac906f61129099cb0032afd75 *man/commonRows.Rd
7456cb1492f63e5be5922eb56fcc7e5c *man/compareBs.Rd
4356f1a7d0d0eb095c1c000914d9572f *man/computeRowStatsFBM.Rd
5e484f1986b9611b4b7bac1a4ff3b7b8 *man/compute_svd.Rd
052041876a61eedd932051a05a88a0f7 *man/cpmCLAMP.Rd
d75018c069f30210717e4910e6fb47bd *man/cpmCLAMPFBM.Rd
543c16399cf5ab48226f4b212eef1caf *man/crossVal.Rd
ece14e112e7769ef3cfee3b4b902acc1 *man/cross_ZY.Rd
61c64b8b5903517a247da141ce4af49b *man/dataWholeBlood.Rd
735cbbd17d2306fa87e6d4b4c3936024 *man/differentialLVActivity.Rd
f737c8a632de6c6418ebed8a3e6bdae1 *man/figures/clamp.png
7e2f1fdf49482c9f1fba8454f8a33212 *man/figures/clamp.svg
f737c8a632de6c6418ebed8a3e6bdae1 *man/figures/logo.png
6ee68912e22e4b0a1cff531e2e77b3d5 *man/filterFBM.Rd
52af57241281d071d48bf86f0c13664a *man/findSplineMax.Rd
0955acf9766529d61a9df235a75d4dfb *man/getAUCstats.Rd
0acb252db61dc51b98f7585280cb5219 *man/getChat.Rd
c243212183f27c2fa1f6f553679ba780 *man/getGMT.Rd
f276aaae234651c56bb5b49a79d1602f *man/getMatchedPathwayMat.Rd
73cd422838e2b50ab3d036ab0c38e6f9 *man/getMatchedPathwayMat2.Rd
fd5fa444f25fec557912813774a17728 *man/getMatchedPathwayMatList.Rd
5804f42251979d30c89f470ce559ffb6 *man/getMatchedPathwayMatOld.Rd
2870fde711d52a43a537bf9540375236 *man/getMaxAUC.Rd
361de6fc7287381e3df3e4ce17a71284 *man/getScaleFromSVs.Rd
f1121420a646e23acc1aa5b6f820e377 *man/gmtListToSparseMat.Rd
b1d0c2c7ac2c1e0ddc66823b928a14a3 *man/majorCellTypes.Rd
cddc99679cd3214dd60026d460c30a52 *man/mat_mult.Rd
60570ce709e8bc5b6fbe0640d36f6e3f *man/max_correspondence_greedy.Rd
80a8120a5d944ae51bda7ac79b60ed71 *man/mymessage.Rd
6a8b39bd8409aa349862ce506c023996 *man/num.pc.Rd
5ec1e6de44f04d77ebb8fc8259fb6294 *man/oneToOneMask.Rd
39882d21e2e7eb9da5a2dbf3549abbec *man/panDB.Rd
5104713a490a50d599fa3cd6392182a7 *man/pinv.ridge.Rd
b03a1687d01857f30338babdfb898293 *man/plotTopZ_Complex.Rd
1e116d4c976fde5c271043382645db5d *man/preprocessCLAMP.Rd
c636ec767f577355f4bf1d1f17e7fbf8 *man/preprocessCLAMPFBM.Rd
6be716e775870c15a80b94090ac8a374 *man/projectCLAMP.Rd
d69cf5ccb7868df3df45f85cb89bc13a *man/read_gmt.Rd
1d4c09eb541611ac7f34b693f569fc74 *man/ridge_B.Rd
27bd91b9d276fae2780fb6f48c43675f *man/rotateSVD.Rd
ccf119b8399bb7ff527f09610a9c4333 *man/row_cor.Rd
b4b35186d80bc2594929dadec429cec1 *man/run_elbow.Rd
d69cc615c1ad7276cb7986a750706653 *man/run_permutation.Rd
42b585d7cfa13c34dd721e146eaf76c6 *man/select_clamp_k.Rd
f87bc94ad91a7f15afd63e7a23e9c328 *man/select_svd_k.Rd
2a3cd1983693a91ad461acef6353613a *man/solveU.Rd
1eb45ac868a28e8000ccf6c9ded630e8 *man/squashZscore.Rd
1589250acfcc7497e721d5b58d716d00 *man/tscale.Rd
e194b165a446605d29c2229dbabd8de5 *man/winsor_topk.Rd
dd72e3623fd9436f002b79b06b635857 *man/xCell.Rd
2098a2a98cd2b71191153985f4b793a7 *man/zscoreCLAMP.Rd
aa85a9a50fa29c33ec6d89354045f81b *man/zscoreCLAMPFBM.Rd
2a6f9e9e044a78154d3cfda5936d6f48 *src/Makevars
2a6f9e9e044a78154d3cfda5936d6f48 *src/Makevars.win
361ea4184677bf3558fadda535ffcaaf *src/RcppExports.cpp
daaedf7992ebb0b2bf99d776735ac6ff *src/updateZ.cpp
eaa37fde50f7ab2e94730af76d3c72fa *tests/testthat.R
dc7a83df4a6e4568e8c30319b157ecfa *tests/testthat/test-CLAMPbase.R
818fefcae8da95973a6e717b08013188 *tests/testthat/test-CLAMPfull.R
44d67a8b7365c3755eb528ac94829f01 *tests/testthat/test-compute_svd.R
ba8eea02ab1bf8f38246d55ed876e09d *tests/testthat/test-cpmCLAMP.R
baee7b6bb896fc0f858f44fc9bbe1232 *tests/testthat/test-cpmCLAMPFBM.R
a4bc725e1caa5b1af80e8a056456c96b *tests/testthat/test-getChat.R
a1e2cfc14d44440d83e6f8c4be3bcf26 *tests/testthat/test-getGMT.R
53d98a92d3fdcf8f0007a04ea30b9b04 *tests/testthat/test-getMatchedPathwayMat.R
6fb47a2bf667c3ff33816cf7ceb73414 *tests/testthat/test-gmtListToSparseMat.R
793c6dbc830185457b14c41e00ab436e *tests/testthat/test-numpc.R
7fbcf3d0eb335ab2d4d6d86a2be2bad5 *tests/testthat/test-plots.R
d29c98d2e1bc529fd1d03fb842a5e405 *tests/testthat/test-preprocessCLAMP.R
93ce7ef9494e8938df1af56adad3ecbf *tests/testthat/test-preprocessCLAMPFBM.R
a207ffb1b7af31fa6537c2df6e25f808 *tests/testthat/test-projectCLAMP.R
3beed7c04e0de8300dedf7e50ab9187e *tests/testthat/test-select_clamp_k.R
7d8ec7cb8bffb70148f045db3e393e99 *tests/testthat/test-select_svd_k.R
62ade3cdbaba81a0d81487149dc937df *tests/testthat/test-zscoreCLAMP.R
1e8c11d7668d28b4efafce9b63489b63 *tests/testthat/test-zscoreCLAMPFBM.R
b80cc27e0fd18f6d795013e81da77e02 *vignettes/comparing_clampbase_clampfull.Rmd
b79e369b6b30231739d9410801636a39 *vignettes/get_started.Rmd
