2f55bb675f015a856d8f10a40dee16bf *DESCRIPTION
a4cda01bd87e6188578cb10f6afdb68c *NAMESPACE
f6c92bf213dfa9ed000c920f7ee1c1dc *NEWS.md
5635e47a90edb339c082729409cccd03 *R/BatChef-package.R
b12845859ee82c3dc96fab35c2970b07 *R/BatChefParams.R
a0999e5986a39e08f77e3b3237ee3c86 *R/Classes.R
12474ca73fa5a89f5874b0d8f642191c *R/Generic.R
5d3804c4f354819195a02c27589e9957 *R/R6_class.R
960c3dddb9433b6ed92ea4bd8e4db25d *R/RcppExports.R
a3b2751900163ec25b1d1075c207f53c *R/adjusted_rand_index.R
13f9f53f9d4929599472a53c37b9734d *R/average_silhouette_width.R
1cddba2eab27448ea99d7eb1d01e3d44 *R/batchCorrect.R
214c6486d0efbeea8eeae244d72ade7d *R/capture_params.R
adb257acf3cd9c2d814adb9b0a5d8634 *R/clustInput.R
f151a3847f02272bc4ac7923d0b64e21 *R/combatRun.R
bd88523b7fff0040f3b2ab10088b5324 *R/compute_lisi.R
fe15276f73ea070a73b21a6ea2716f34 *R/extract_features.R
0fae10eb59795616f9565cbda4535d5f *R/fastMNNPost.R
8c2aa6893f5894668724e6544750e4e1 *R/fastMNNRun.R
89e2cd06dd7a7152234d51c80a9f8067 *R/harmonyPost.R
d73c5111cfa1b589b43ea81d54b1a14c *R/harmonyRun.R
a024a9492df8a5209b7f55632d73d070 *R/leiden_clustering.R
cc2ec757b8dc371c3fa67f9750f35d45 *R/ligerInput.R
155918e1780aa826e8fd4a6eee0dad7d *R/ligerPost.R
4d4503daf21807741a8b38d1eb69e4d1 *R/ligerRun.R
f85e754dde2dc57079a69a7ae2866101 *R/limmaRun.R
cc49264dac9df9ed389cf04306c72044 *R/linearInput.R
a6c50ef305e2b8ebed0c2206c9374ec1 *R/linearPost.R
4e95d11599ec33c00393006b1185e6a0 *R/local_inverse_simpson_index.R
c3e8558f723f8c5193b8417de1401ba4 *R/merge_params.R
7cc262b5978d56733e7d1dbe1ff3c765 *R/metrics.R
d097d360ea45e77a8ca8e3930a7a8593 *R/normalized_mutual_info.R
89e42119b26a269c7870e2342dc69ebf *R/params.R
fba435a86f1aba35e1b3f9a05de96ccf *R/prediction_plot.R
b5d4073625aebb586c8a604e78efe77f *R/scMerge2Post.R
2c4854e2cd4e2f28cbb22e6a9ca8ceae *R/scMerge2Run.R
bfab8cc0719e3a45ecb22ab084902a90 *R/sceInput.R
a7765ef30804107f82bea076a14d96b4 *R/seuratV3Run.R
7d2719e87d468deaa346f59f0db6c5b5 *R/seuratV5Input.R
dfeebeba3dfab848c4d590a1e965723c *R/seuratV5Post.R
c47bb2b49f033add11592ee193e03e69 *R/seuratV5Run.R
feff9792d5300aa966615572c1e828c5 *R/seuratv3Input.R
bf2805f9e9978d6960e12bfc01bc8a99 *R/seuratv3Post.R
d95b9d94257ac3d680a37e5e0f235d5e *R/simulate_data.R
9b542bb0bd400ae81b242ff98ab2ab88 *R/suggested_method.R
25a0d329c9c8725e9725f83adcc54502 *R/warnings.R
f984d6325d7f5551e06602d4ebfd61f2 *R/wasserstein_distance.R
28fa615e6dadf4cdcb4c8329938e0e70 *README.md
b7a46d72337b4a207fa32f41f1a164c8 *build/vignette.rds
7dffe4e7528ce35319960f4865ba2f25 *inst/doc/batch_correction.R
ca3bbe8f40e5971aff8cf47e3b34ae28 *inst/doc/batch_correction.Rmd
878322b9a6b8b260508d2e8a4f96f8ed *inst/doc/batch_correction.html
3e37371961727c4000dac603bb6abf9f *inst/extdata/README.md
286e76938b389c27a04dff8a2a30b592 *inst/extdata/svm.rda
a6189678af843822ca68b80df6e2d5f1 *man/BatChef-package.Rd
2f882f76489e46e4df837ab2163e2588 *man/BatChefParams.Rd
12594659ac0cae9f74a921b4c59348bf *man/adjusted_rand_index.Rd
5e15210df9172f040168d441ad41d1bc *man/average_silhouette_width.Rd
3ef8daee46203a092910cbfeff1a3c59 *man/batchCorrect.Rd
8c8b458662c3fc0aea418849573cefa3 *man/batch_params.Rd
d0f4b342863c3e30e665cf56ff3891c6 *man/capture_params.Rd
4d4a5b5a9ebc0014e1d6c3b952b1ba85 *man/clustInput.Rd
c56131afc65acdc9b15ef92b1b27867f *man/combatRun.Rd
3ab8e5b97d46437a9a3817dea37ebf72 *man/compute_lisi.Rd
e22b3cd433a90a58f49d396196e77009 *man/compute_simpson_index.Rd
4d59e2f0c91f5c8c606d0156a504c189 *man/extract_features.Rd
d71b3f53180c19a42dc88b3535ddd78c *man/fastMNNPost.Rd
d6c325d97e80edd161ba35ac093d0baf *man/fastMNNRun.Rd
48b7b398d40a23e558076ad2bb131a7d *man/harmonyPost.Rd
5954e05ff4c904b09780613a7c1a320b *man/harmonyRun.Rd
417aad2884e9f8e886d2f433138b6875 *man/kl_gamma.Rd
32a9605c113e8074a92fea4213723000 *man/leiden_clustering.Rd
4beb7256dc2ca364544d7f02d06edb94 *man/lib_size_params.Rd
d0e5500f72a539fb64a8907dc513ae09 *man/ligerInput.Rd
c75aa8a676508e7434a5e0ebf7709f07 *man/ligerPost.Rd
ef30c0dd0908e3e3a1767efe9930dee7 *man/ligerRun.Rd
961f7c7b40285b39fedec82b7d63d432 *man/limmaRun.Rd
583fc9b7146642f4b4c0663b67e50d32 *man/linearInput.Rd
ca031b7b8abc478bba5c397ec7b6445a *man/linearPost.Rd
613df321a9699b5077d878a88ffd120b *man/local_inverse_simpson_index.Rd
d5d546a4e5ae7b0301ae945469838bf8 *man/log_transf.Rd
acaf989d07cdcca6aa3a1541fae77ce4 *man/merge_params.Rd
2643394477000e6e345e195274aa1582 *man/metrics.Rd
532ef7605fac4098d5d9a7b1d0ea7ddd *man/normalized.Rd
0b698f1707ff50163eba1cb418908b5f *man/normalized_mutual_info.Rd
936414cce982a6d1c00b23c43b79a867 *man/outlier_params.Rd
1a58364e86125fd146423a0316793d76 *man/params_btc_factors.Rd
4747a61b35b0113ea2e88d425940c1f6 *man/prediction_plot.Rd
3e76c6c740084ae024bd6c38093f6e5a *man/scMerge2Post.Rd
3686cabed106ed6825b69bdc3f3c1637 *man/scMerge2Run.Rd
89ad1d1633e4457949c65c0eee8fbe72 *man/sceInput.Rd
e884c8d81332d2358e7b1423caec1d52 *man/seuratV3Run.Rd
35f6c1e448967c5f4bcd658ebe0a2868 *man/seuratV5Run.Rd
a6e10cf654ed8d30040da71831636571 *man/seuratv3Input.Rd
5023e743454f7d85d1435f6316c7bf45 *man/seuratv3Post.Rd
f2bfb410e16457381ac531b16d8d2154 *man/seuratv5Input.Rd
05fabc1ebe85237d54d6065f566a7eee *man/seuratv5Post.Rd
a3e31c482f399768b0f36fef83343941 *man/simulate_data.Rd
1d264c5289c15de9c0c1f5ecca329bad *man/suggested_method.Rd
abd1decc7ca3f7de66bc7f59dd422f5c *man/wasserstein_distance.Rd
fa47c6b1babc4e281fb03ad47411e773 *man/winsorization.Rd
c3734ff8853ccecfd4870b11c16403a0 *src/RcppExports.cpp
47d8b6119d34a42d1e14bcf3073d9fbb *src/utils.cpp
02ed2f55131c3de3010ae5e99c4b58ac *tests/testthat.R
1c61e78ef785b24c0a559759a1549b64 *tests/testthat/test-batch_correction.R
0062fada1fcbe0d48528651e3d7650e5 *tests/testthat/test-metrics.R
cb5658a7f0ecaa6f2bd543442bf9217e *tests/testthat/test-suggested_method.R
ca3bbe8f40e5971aff8cf47e3b34ae28 *vignettes/batch_correction.Rmd
