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yarn

YARN: Robust Multi-Condition RNA-Seq Preprocessing and Normalization

Bioconductor version: 3.24 · Package version: 1.39.0

Expedite large RNA-Seq analyses using a combination of previously developed tools. YARN is meant to make it easier for the user in performing basic mis-annotation quality control, filtering, and condition-aware normalization. YARN leverages many Bioconductor tools and statistical techniques to account for the large heterogeneity and sparsity found in very large RNA-seq experiments.

Installation

if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("yarn")

Details

MaintainerJoseph N Paulson <paulson.joseph@gene.com>
AuthorJoseph N Paulson [aut, cre], Cho-Yi Chen [aut], Camila Lopes-Ramos [aut], Marieke Kuijjer [aut], John Platig [aut], Abhijeet Sonawane [aut], Maud Fagny [aut], Kimberly Glass [aut], John Quackenbush [aut]
LicenseArtistic-2.0
Downloads rank618
Source branchdevel
biocViewsAnnotation, Clustering, GeneExpression, Normalization, Preprocessing, QualityControl, Sequencing, Software, Visualization

Documentation

Download

Follow the installation instructions to use this package in your R session.

Source packageyarn_1.39.0.tar.gz
Windows binary (x86_64)yarn_1.39.0.zip
macOS binary (arm64)yarn_1.39.0.tgz
macOS binary (x86_64)yarn_1.39.0.tgz
Dependencies

Depends: Biobase

Imports: biomaRt, downloader, edgeR, gplots, graphics, limma, matrixStats, preprocessCore, readr, RColorBrewer, stats, quantro

Suggests: knitr, rmarkdown, testthat (>= 0.8)